BAC Information

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BAC

Clone NameMSMg01-298F06
Chromosome9 (Build37)
Map Location 36,551,722 - 36,551,948
singlet/doubletsinglet
Overlap geneStt3a
Upstream geneD730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1
Downstream geneEi24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298F06.T7 (MSMg01no298_f06.b1)MSMg01-298F06.TJ (MSMg01no298_f06.g1)
ACCAG425409AG425410
length737807
length of high quality
(start - end)
230 (120 - 349)178 (177 - 354)
definitionCHROMAT_FILE: MSMg01no298_f06.b1 PHD_FILE: MSMg01no298_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:59 2005CHROMAT_FILE: MSMg01no298_f06.g1 PHD_FILE: MSMg01no298_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAG
ATGTTTCTGTATCTGACTCCTGAGTGCTGGGATTAAAGGCATGTACCACC
AATGCCTATCCTTCCCTCTAATATCTTGATTGCTGGAATTACAGGCTTGC
ACTGCAACAGAGTTTAAAAAGTACATACTTCTCTCATGCTATAGCTATAT
CATATAGTTTCTATTCCACTTTTTCTGGAATATAGTGTTGGAAATTGCTA
AGTTGACATCATAGTCTACTAAAAGATTGAAGTTTGTCATTTGTGAAACA
CAGATTATACTGATATTATTCTTGTTCTTCTTAGGTGCGTCCAATGCTGG
CATTGGCACCTGCTATGTGCATTCTTTCTGGCATTGGTGTTTCTCATGTG
CTGTCCACATATATGAAAAATCTGGATATAAGTCGTCCATACAAGAAGAG
CAAGAAGCAACAGGATTCTACTTACCCTATTAAGAATGAGGTGAGGGGCT
GGAGTGATTGCTCAGTGCTTTATGGCACTGACTGCTCTTCTAGATGTCCT
GAGTCCGATTCTTGTAAACCACCTGTGGCTCACAACCATCTATAACGCGA
CTTGATGCCTTCTTCTGGTGTGTCCGAGGACAGTTACCGCGTACTCATAC
CCATTAAAATCTTACACCACCAAACAATGACCCGCAGCTTCAACCACATG
CTGCCTAGACCACCAAGTGGCTGCATGTATGTATGTG
CTTTCCTCCTCTTTTTTTCCCCTCCCTCCCAATAACCACCCCTCTCCTTT
TTTCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATAGGG
TGACCTATAGAAGTTCCCCGAAATTTCACCTGAGGAAACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCACTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCATAAAATTGTTCATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGTGCATACATCCAGAAGATGACCCAACTGGTAAGAA
GGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCTGAA
GCTGGAAAGAACCCATATGCCCCTCATCAGATTGAATGGATACTGATTAT
GTGGTACATCTACACAATGTAGTACTACTCTTCTATTAAAAAGAATGAAT
ATATGATACTCCTAGCCTAATGGATGGACCTGGAGGGCATCGTCCTGAGT
GAGGCACAACTTTCATTTATGTACTTACATTATTATGTACTCTTTTGAAT
AGTGTGATATTATCCCACAAACTTCGTCTATTCCCCGAAATTATCATTCA
ATTTTTTTATAATCATCGAAACTTTAGCAAATATGATTAACTGCAGCGTT
GGCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_f06.b1 MSMg01no298_f06.b1 CHROMAT_FILE:
MSMg01no298_f06.b1 PHD_FILE: MSMg01no298_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:59 2005
         (230 letters)



>mm_chr9_36551519_36552148
          Length = 630

 Score =  408 bits (211), Expect = e-118
 Identities = 223/227 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   atcttgattgctggaattacaggcttgcactgcaacagagtttaaaaagtacatacttct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atcttgattgctggaattacaggcttgcactgcaacagagtttaaaaagtacatacttct 371

                                                                       
Query: 64  ctcatgctatagctatatcatatagtttctattccactttttctggaatatagtgttgga 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 370 ctcatgctatagctatatcatatagtttctattccactttttctggaatagagtgttgga 311

                                                                       
Query: 124 aattgctaagttgacatcatagtctactaaaagattgaagtttgtcatttgtgaaacaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 310 aattgctaagttgacatcatagtctactaaaagattgaagtttgtcatttgtgaaacact 251

                                                          
Query: 184 gattatactgatattattcttgttcttcttaggtgcgtccaatgctg 230
           ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 250 gattatactgatattattcttgttctttttaggtgcgtctaatgctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)