BAC Information

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BAC

Clone NameMSMg01-298F23
Chromosome9 (Build37)
Map Location 14,392,651 - 14,393,212
singlet/doubletsinglet
Overlap geneAmotl1
Upstream geneMaml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik
Downstream geneEG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298F23.T7 (MSMg01no298_f23.b1)MSMg01-298F23.TJ (MSMg01no298_f23.g1)
ACCAG425440AG425441
length768768
length of high quality
(start - end)
549 (47 - 595)291 (130 - 420)
definitionCHROMAT_FILE: MSMg01no298_f23.b1 PHD_FILE: MSMg01no298_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:03 2005CHROMAT_FILE: MSMg01no298_f23.g1 PHD_FILE: MSMg01no298_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCCAGGGGTGTTTCGATTTCTCTATTAGAGTGGTTTAGAGTATATTA
GTCAAGATGAAGTCTTCCCCTCCCCCCAAGAGCTCTATGTTAAAAATGAG
AGTGAAGAACTAGAGCTGCTAAAAGTTTCATATTGCTCTCCTATTTCCCA
GTAAGCCACTAACATGGTAAAACATGGGATTTACTAGCTAGATAGTATCA
ATCTTGAAAATGTTTTTGCTCCTATCATTTATATACTTTAATCAAGATCA
TGTATAAAATAAAACTAAAACCTGTTTTTCTCTAATACCTGTTTGAGTTT
TCCTTTACAGATGCTTGGCTCTCTGCAGCTCTGTGTGAAATCATGGAGCA
CTGTAGCAGGGTTTCCCCCCCCACTTACTGGGTGCAGATATTTACTGTGG
GTTATGTTCCTTAACATTTACAACAATTATAAGAAATGGGGACTAGGGAT
TGGGGAGATTGCTCAGCAGCAAAGGGCATTGCTGTTCTTACAAAAGAGGA
CCCCAGGTCAGTTCCTAGTACCTGCATGGCGGCTCACAACTGTCTATAAC
TCCAGTTCCAGGGACCTAGTACTTCTTTTGGCCTCATGAGCAGTACGCAT
GAGGTCCACAAACACATATGCATATAAAACACCCATACACATTTTATACA
CACATTTATCCCGCACTTAACAAAATAGTTGTTATTTATAAGCCCATTTT
TATGTGTGTCAAACCTGA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCCGAAAATCTCCTCTGAAGAAACAGACTGGGAGGA
AGAAGCAGCTCATTATGAGTTAAACCCCTACCAGCCAGGTAAAGTGCTAG
CTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGAT
TGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCCCGCC
CTGCGTAGTGCGTCAGCCCTGCGCAGAGAGGCAGTGCGCAGAGAGGCAGT
GCGCAGACTCATTCATTCCCAGAGAGTAACTAAGGAAAATACAACAGGCA
TTTCCAGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAGA
ATACGTACAGATTAAAGACCCCCCCCAGTCGGTCCGTAAATATGGAACCA
ATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATGGCACTA
ACTCCTGCTGACTGGCAAATGGTTGTAAAAGCCGCTCTCCCTAGTATGGG
CAAATATATGGAATGGAGAGCTCTTTGGCATGAAACTGCACAAGCGCAGG
CCCGAGCAAACGCAGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTT
GACTTGTTAACGGGCTCAAGGAGCTTATTCTGCTGATCAGACAAACTACC
ATTGGGGAGCTTATGCCCAGATTTCTTCCACGGCTATTATGGCCTGTAAG
GCGCTCTCCCGAGCAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_f23.b1 MSMg01no298_f23.b1 CHROMAT_FILE:
MSMg01no298_f23.b1 PHD_FILE: MSMg01no298_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:03 2005
         (549 letters)



>mm_chr9_14392420_14393368
          Length = 949

 Score =  928 bits (480), Expect = 0.0
 Identities = 534/566 (94%), Gaps = 24/566 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccaggggtgtttcgatttctctattagagtggtttagagtatattagtcaagatg 63
           |||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 793 gaattccaggggtggttggatttctctattagagtgatttagagtatattagtcaagatg 734

                                                                       
Query: 64  aagtcttcccctccccccaagagctctatgttaaaaatgagagtgaagaactagagctgc 123
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cagtcttcccctccccccaagagctctatgttaaaaatgagagtgaagaactagagctgc 674

                                                                       
Query: 124 taaaagtt----------------tcatattgctctcctatttcccagtaagccactaac 167
           ||||||||                ||||||||||||||||||||||||||||||||||||
Sbjct: 673 taaaagtttcatattgatctcctatcatattgctctcctatttcccagtaagccactaac 614

                                                                       
Query: 168 atggtaaaacatgggatttactagctagatagtatcaatcttgaaaatgtttttgctcct 227
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 613 atggtaaaacatgggatttactagctagatagtatcaatctggaaaatgtttttgctcct 554

                                                                       
Query: 228 atcatttatatactttaatcaagatcatgtataaaataaaactaaaacctgtttttctct 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atcatttatatactttaatcaagatcatgtataaaataaaactaaaacctgtttttctct 494

                                                                       
Query: 288 aatacctgtttgagttttcctttacagatgcttggctctctgcagctctgtgtgaaatca 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatacctgtttgagttttcctttacagatgcttggctctctgcagctctgtgtgaaatca 434

                                                                       
Query: 348 tggagcactgtagcagggtttcccccccc----acttactgggtgcagatatttactgtg 403
           |||||||||||||||||||||    ||||    |||||||||||||||||||||||||||
Sbjct: 433 tggagcactgtagcagggttt----ccccaaggacttactgggtgcagatatttactgtg 378

                                                                       
Query: 404 ggttatgttccttaacatttacaacaattataagaaatggggactagggattggggagat 463
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggttatgttccttaacgtttacaacaattataagaaatggggactagggattggggagat 318

                                                                       
Query: 464 tgctcagcagcaaagggcattgctgttcttacaaaagaggaccccaggtcagttcctagt 523
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgctcagcagcaaagggcattgccgttcttacaaaagaggaccccaggtcagttcctagt 258

                                     
Query: 524 acctgcatggcggctcacaactgtct 549
           |||||||||| |||||||||||||||
Sbjct: 257 acctgcatggtggctcacaactgtct 232


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)