Query= MSMg01no298_m03.b1 MSMg01no298_m03.b1 CHROMAT_FILE:
MSMg01no298_m03.b1 PHD_FILE: MSMg01no298_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:30 2005
(544 letters)
>mm_chr9_63561190_63562133
Length = 944
Score = 990 bits (512), Expect = 0.0
Identities = 535/544 (98%), Gaps = 3/544 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagtgcctgcctcccatctctctgtagggatgctaggatcatgtatgtgtgctt 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattcagtgcctgcttcccatctctctgtagggatgctaggatcatgtatgtgtgctt 260
Query: 64 ccgggtcttggccagatgttgttctggggacctgactcaagtcctcaaatacaacaactg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgggtcttggccagatgttgttctggggacctgactcaagtcctcaaatacaacaactg 320
Query: 124 ttttacctcagactgc---cccccccccccaagctcaggggaggaatacggagcatgtga 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttacctcagactgcacccccccccccccaagctcaggggaggaatacggagcatgtga 380
Query: 181 gggaaagaacatcttacacagagctgtcaatctagaggggaggggcaaagaaaaacagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaaagaacatcttacacagagctgtcaatctagaggggaggggcaaagaaaaacagaa 440
Query: 241 cacttgtggtttttaaaaaagatctgattctagggtctacaggagaatcttgatgtgagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacttgtggtttttaaaaaagatctgattctagggtctacaggagaatcttgatgtgagc 500
Query: 301 aacactgggtactaacctctcacacttcaccttactctcctctctttcccttgactatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacactgggtactaacctctcacacttcaccttactctcctctctttcccttgactatac 560
Query: 361 aatgtatgcatacatataattgatttgtacattcgtacatacatacatacatactatatt 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 aatgtatgcatacatataattgatttgtacatttgtacatacatacatacatactatatt 620
Query: 421 ttttagcatttctgcaaatctttctcttttttcagaacgggtaaattaagaaaatctaca 480
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 621 ttttagcatttctgcaaatctttctctttttttggaatgggtaaattaagaaaatctaca 680
Query: 481 cgtaggggctgggagacacctcagtggttacacatgcttgttgctcaggtatgaagacct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgtaggggctgggagacacctcagtggttacacatgcttgttgctcaggtatgaagacct 740
Query: 541 gaat 544
||||
Sbjct: 741 gaat 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_m03.g1 MSMg01no298_m03.g1 CHROMAT_FILE:
MSMg01no298_m03.g1 PHD_FILE: MSMg01no298_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:30 2005
(373 letters)
>mm_chr9_63720633_63721405
Length = 773
Score = 690 bits (357), Expect = 0.0
Identities = 369/373 (98%)
Strand = Plus / Minus
Query: 1 caggagaaggaaaatgagtggaggtaaacatttagtgagtgatggctaacatgtctagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 caggagaaggaaaatgagtggaggtaaacatttagtgagtgatggctaacatgtctagac 547
Query: 61 ctgagaagagacataaactagcttgcagataaagccagggagtcttacataagttaaata 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 546 ctgagaagagacataaactagcttgcagataaagctagggagtcttacataagttaaata 487
Query: 121 aatttaatttatttgtggatttaaaagggtgaaactggacaaagctaaagtcaaagatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aatttaatttatttgtggatttaaaagggtgaaactggacaaagctaaagtcaaagatct 427
Query: 181 tcaaaattgccagagtgggggaacaaacagatggcaatgtatgcagaagaaaacatggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcaaaattgccagagtgggggaacaaacagatggcaatgtatgcagaagaaaacatggtt 367
Query: 241 aggttagttgttggctcacatagcaacaagtggacgactgaagatcaccgtaatccagct 300
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aggttagctgctggctcacatagcaacaagtggacgactgaagatcaccgtaatccagct 307
Query: 301 ccaagggattggaaaccctcttctgtctcccaagggtgcctgcacacacacacacacaca 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccaagggatcggaaaccctcttctgtctcccaagggtgcctgcacacacacacacacaca 247
Query: 361 cacacacacacac 373
|||||||||||||
Sbjct: 246 cacacacacacac 234
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 22
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
