Query= MSMg01no298_p11.b1 MSMg01no298_p11.b1 CHROMAT_FILE:
MSMg01no298_p11.b1 PHD_FILE: MSMg01no298_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:45 2005
(700 letters)
>mm_chr9_119352173_119353272
Length = 1100
Score = 1282 bits (663), Expect = 0.0
Identities = 688/697 (98%), Gaps = 4/697 (0%)
Strand = Plus / Plus
Query: 6 gaattcaaagatgccgttttaaagccaaaaagaggaacattagggaaggttgggtgatct 65
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagatgcagttttaaagccaaaaagaggaacattagggaaggttgggtgatct 264
Query: 66 atatcacgattggtgggttctatctctgggggtctgggtgatgccatgattagttagggt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatcacgattggtgggttctatctctgggggtctgggtgatgccatgattagttagggt 324
Query: 126 ctccattcaagcaaacttcatgcca-ggagggggcagctcttgatctcctagctgtaagt 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccattcaagcaaacttcatgccaaggagggggcagctcttgatctcctagctgtaagt 384
Query: 185 ttgcctaacgattcttttgcaagctagggaggggttccttttatgtaagcctggttgtcc 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 ttgcctaacgattcttttgcaagctagggaggggtcccttttatgtaagcctggttgtcc 444
Query: 245 cagtaactgacttgcccagtctgggaagtataaactcagggctagtctcctgaactgctg 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 cagtaactgacttgcccagtctgggaagtagaaactcagggctagtctcctgaactgctg 504
Query: 305 gtttgcagcctgtcatggagtcagcctggctcaggccaatgctctttttatgggaagctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtttgcagcctgtcatggagtcagcctggctcaggccaatgctctttttatgggaagctg 564
Query: 365 gagactgctgccaggtgaagacccattgatctgagtgggagtctattaaacacgaatatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagactgctgccaggtgaagacccattgatctgagtgggagtctattaaacacgaatatt 624
Query: 425 cttctttttacaaaaaataatttacggtcttcagagtgagttcctggacagccagggcta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttctttttacaaaaaataatttacggtcttcagagtgagttcctggacagccagggcta 684
Query: 485 cacagagaaaccctgtcttaaaaaaaaaa-caaaattaataacaatttacttaattttat 543
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 685 cacagagaaaccctgtcttaaaaaaaaaaacaaaaataataacaatttacttaattttat 744
Query: 544 tttatgtgcattggtgtgagagtgtcagagtcatgagctaccatgtgggtgctgggaatt 603
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 tttatgtgcattggtgtgagggtgtcag--tcatgagctaccatgtgggtgctgggaatt 802
Query: 604 gaacccagaccctttagaagagctgacagtgttcttaatcacttagccatttctctggac 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaacccagaccctttagaagagctgacagtgttcttaatcacttagccatttctctggac 862
Query: 664 cttatgttctccctttgtcagtgggcatttgcccatc 700
|||||||||||||||||||||||||||||||||||||
Sbjct: 863 cttatgttctccctttgtcagtgggcatttgcccatc 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_p11.g1 MSMg01no298_p11.g1 CHROMAT_FILE:
MSMg01no298_p11.g1 PHD_FILE: MSMg01no298_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:45 2005
(659 letters)
>mm_chr9_119519827_119520882
Length = 1056
Score = 1205 bits (623), Expect = 0.0
Identities = 649/663 (97%), Gaps = 11/663 (1%)
Strand = Plus / Minus
Query: 1 caagatgagccttggctgcagagtgagacttcctttaaaaagcaaacaaaaagcaaacaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 caaggtgagccttggctgcagagtgagacttcctttaaaaagcaaacaaaaagcaaacaa 797
Query: 61 acgagagccctccctctcagacttatgggacttaacacaacaggaggttttgtagtcggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 acgagagccctccctctcagacttatgggacttaacacaacaggaggttttgtagtcggt 737
Query: 121 tggctagtgggcttgggtttttatttattttgtttcatctgtctttcaaagtaagagatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tggctagtgggcttgggtttttatttattttgtttcatctgtctttcaaagtaagagatt 677
Query: 181 cacaaggacattttgatgggaggagcttgcgtgtctggccaaccatatcaacgatataga 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cacaaggacattttgatg---ggagcttgcgtgtctggccaaccatatcaacgatataga 620
Query: 241 a----catttttgtgtcctgtgccctgtgacacataagggcttctaactaccagttcttg 296
| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acaacca----tgtgtcctgtgccctgtgacacataagggcttctaactaccagttcttg 564
Query: 297 gttcctatgaggcagccccatccactgggcaggaatccactatggtggaaactgcctgaa 356
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563 gttcctatgaggcagccccatccactgagcaggaatccactatggtggaaactgcctgaa 504
Query: 357 gaggctacctgtccatcttccttctcttcctcctctttgtctttcccaccagagggacat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaggctacctgtccatcttccttctcttcctcctctttgtctttcccaccagagggacat 444
Query: 417 ttattgttgcaagtgtgcattttctctctctcctgaacaatcctgggaaaacaaaagcta 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttattgttgcaagtgtgcattttctctctctcctgaacaatcctgggaaaacaaaagcta 384
Query: 477 cacagcacttgtctggaaggagtgaaaccttccagggaggaagagtgccatagttgaagt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacagcacttgtctggaaggagtgaaaccttccagggaggaagagtgccatagttgaagt 324
Query: 537 agacttcccgagaactttcccagagcatccgtaagctatatgtgcgcacaatcccacagg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agacttcccgagaactttcccagagcatccgtaagctatatgtgcgcacaatcccacagg 264
Query: 597 agatgacatagtgggtacacgcactcttcatctttctgcccttcctaatcatgggtagaa 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 263 agatgacatagtgggtacacgcactcttcatctttctgcccttcctaatcatgggtagga 204
Query: 657 tgg 659
|||
Sbjct: 203 tgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1056
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1046
Effective search space: 678854
Effective search space used: 678854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
