Query= MSMg01no299_l03.b1 MSMg01no299_l03.b1 CHROMAT_FILE:
MSMg01no299_l03.b1 PHD_FILE: MSMg01no299_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:41 2005
(325 letters)
>mm_chr9_59937380_59938107
Length = 728
Score = 538 bits (278), Expect = e-157
Identities = 310/322 (96%), Gaps = 3/322 (0%)
Strand = Plus / Plus
Query: 5 gaattccttcagactaaaatctgtgggacatgtgataaagtgcgatttctaccatcaatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcagactaaaatctgtgggacatgtgataaagtgcgatttctaccatcaatt 264
Query: 65 aggaagactcagaaatcaaacccagctttccggataaccgatcccagattctggaagtgg 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggaagactccgaaatcaaacccagctttccggataaccgatcccagattctggaagtgg 324
Query: 125 gaaggacttcgaagcagcctctctgaggtcaaccacgtcacacctctgattcttactctt 184
||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct: 325 gaaggacttcgaagcagcctctccaaggtcaaccacgtcacacctccgacccttactctt 384
Query: 185 gagatggtcagcttcatttccagccatgctaata---gccaaggaagaatctgaccataa 241
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 385 gagatggtcagcttcatttccagccatgctaataatagccaagggagaatctgaccataa 444
Query: 242 catatcaaggtcattacggacgcttgagaaatcaagcagcctggtgatgggaagtggcac 301
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 catatcaaggtcattacggacgcttgagaaatcaagcagcctggtgatgggaggtggcac 504
Query: 302 aacttcttgtcctgccggaatg 323
|||||||||||||||| |||||
Sbjct: 505 aacttcttgtcctgcctgaatg 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 728
Length adjustment: 9
Effective length of query: 316
Effective length of database: 719
Effective search space: 227204
Effective search space used: 227204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_l03.g1 MSMg01no299_l03.g1 CHROMAT_FILE:
MSMg01no299_l03.g1 PHD_FILE: MSMg01no299_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:41 2005
(288 letters)
>mm_chr9_60100175_60100862
Length = 688
Score = 557 bits (288), Expect = e-163
Identities = 288/288 (100%)
Strand = Plus / Minus
Query: 1 tacagagatgaggtctctcaagcctcatctttgttttctctcccccccaccccacctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tacagagatgaggtctctcaagcctcatctttgttttctctcccccccaccccacctctc 429
Query: 61 tctctgtagtaaagggtaatcgcaagtgtgagctgaactgccaggcaaccggctaccgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tctctgtagtaaagggtaatcgcaagtgtgagctgaactgccaggcaaccggctaccgct 369
Query: 121 tctacgtccggcaagctgagaaggtcatcgatggcacaccctgtgatcagaatggcacgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tctacgtccggcaagctgagaaggtcatcgatggcacaccctgtgatcagaatggcacgg 309
Query: 181 caatctgtgtgtcggggcagtgcaaggtaagtgcgatggacttgggggtctgcagggtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 caatctgtgtgtcggggcagtgcaaggtaagtgcgatggacttgggggtctgcagggtat 249
Query: 241 ttagcccgcaatctatggttttccagggaaggaagggatagcctggag 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttagcccgcaatctatggttttccagggaaggaagggatagcctggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
