BAC Information

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BAC

Clone NameMSMg01-299M12
Chromosome9 (Build37)
Map Location 122,690,785 - 122,691,139
singlet/doubletsinglet
Overlap geneLOC671232
Upstream geneKbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218
Downstream geneD9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299M12.T7 (MSMg01no299_m12.b1)MSMg01-299M12.TJ (MSMg01no299_m12.g1)
ACCAG426459AG426460
length791771
length of high quality
(start - end)
355 (47 - 401)343 (72 - 414)
definitionCHROMAT_FILE: MSMg01no299_m12.b1 PHD_FILE: MSMg01no299_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:48 2005CHROMAT_FILE: MSMg01no299_m12.g1 PHD_FILE: MSMg01no299_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAAT
TCTTTCTCTGTAACACTTAAAGTCACAACAAAATAAATCAGTATATAATT
AGAAAGTTGTAACTAAAATAAAGTAGTTAGGAATTGGTTTAAAATTTGGC
ATTAAGCAAAATGAGAAATAAAATTTTAATGCTACCTAAAACACATTAAA
AATAAATGTGTACGTATGTATGTGCATATATGGAAACTAGAGGTCAGCAT
CACTTTCCAGCTTGCTTAGGCCACTGCCCACTCCTGTCTCTACCTAACTA
GCACTGGGATTGCAGGCCTATGTTTCTGTGCCTCGCTTATTACAGGGGTG
CTGAAGATCCAAATTTAGGTCCTCCCGCTTGTATAGCAAGCATTTTACCA
GCTGAGTTACCTCCCCAACTGCCAAGTTTAACTTTTCTTGAATGCTTCAA
AATACCTGATAAGCACCAACAAGCACTAGATGAAAACAGGTGCGGTGGCA
AATGTCTGTACTTCTAGTCCTCCCAAGGTGGAGGCAGGGGAATCAAAAGT
AACGTTTGAAGCCAGGCTAGGCAACATGAGCTCCTGCCCTAAAAAAAATA
ATTATATCTTCAAGCTTGTCCAGCCCTCCAGTTAAAGGCAAACCCCAAAA
AGCCAACCAACGATTCGGTTTGTCCTTGGGCCCCCCGCGCCCGTTTTACC
CCAACCTTGTCGGTTCCCCCACTTAATCTCTGACCCCTTTCTTCCCACAA
TCACGGTTTAATGTAAATTTCCCGCCTCTCCGAGACCTTCT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACTTGATACAGTACAAATACAACATAGGC
TGCTGTTTAAAACTTAAAACCAGTGAAATAATGTTTAAATTGTTGTTCTA
AATGGTGGTGGCGCTTGTCTTTAATCTTAGCACTTGGCAAGCAAAGACAG
GTGGATCTCTGAGTTTGAGGACAGCGTTGATCTACAGAGGAAGTTCCAGG
ATGTCCAGGGCTACAAAAAGAAGCCCTGTTTCATAAAAACAAAAATGTAC
TAAATAGAATAAAGTAGTCATTGTTATCATCATCATGTGTGTCTGCATCA
ATACCACAGCATATGTATAAGTCAAAGGACAACTACCTGATGGTGATCCT
CTCCTCCCACCATCGCCGAAGGTACCAGTGATCAAACACAAATGCCTTAA
TCCCACTGCCAACTTACAAAAAGTTGCAAAACTAATGCAAAATATTTTTG
TATATAATGCTGATCAAAATATTAATCACAAATATCTGCTTAACCCTAAA
GTGAGATGCTCACATGGCAACTCTATTGTGAGGGAAGGATGACACCAAGG
TAATTTATCAAAGTTCAGTGCTTTACTGTCTGAAGAACATGATGAGCCTA
CCACTGTACATGGCCCAACCTCTCCCTCCAGAACTGTGTCTCATTGACGT
TTTTAACATCAAAAACCTACTTTGCTCTTACAGCCCTCTCCTCCTCTACC
CTACTCTAAAACTATACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_m12.b1 MSMg01no299_m12.b1 CHROMAT_FILE:
MSMg01no299_m12.b1 PHD_FILE: MSMg01no299_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:48 2005
         (355 letters)



>mm_chr9_122690585_122691339
          Length = 755

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattctttctctgtaacacttaaagtcacaacaaaataaatcagtatataattagaaag 60
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctttctctgaaatacttaaagtcacaacaaaataaatcagtatataattagaaag 260

                                                                       
Query: 61  ttgtaactaaaataaagtagttaggaattggtttaaaatttggcattaagcaaaatgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaactaaaataaagtagttaggaattggtttaaaatttggcattaagcaaaatgaga 320

                                                                       
Query: 121 aataaaattttaatgctacctaaaacacattaaaaataaatgtgtacgtatgtatgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaaattttaatgctacctaaaacacattaaaaataaatgtgtacgtatgtatgtgca 380

                                                                       
Query: 181 tatatggaaactagaggtcagcatcactttccagcttgcttaggccactgcccactcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatatggaaactagaggtcagcatcactttccagcttgcttaggccactgcccactcctg 440

                                                                       
Query: 241 tctctacctaactagcactgggattgcaggcctatgtttctgtgcctcgcttattacagg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctacctcactagcactgggattgcaggcctatgtttctgtgcctcgcttattacagg 500

                                                                  
Query: 301 ggtgctgaagatccaaatttaggtcctcccgcttgtatagcaagcattttaccag 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgctgaagatccaaatttaggtcctcccgcttgtatagcaagcattttaccag 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)