Query= MSMg01no300_a16.b1 MSMg01no300_a16.b1 CHROMAT_FILE:
MSMg01no300_a16.b1 PHD_FILE: MSMg01no300_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:07 2005
(310 letters)
>mm_chr9_65969059_65969767
Length = 709
Score = 545 bits (282), Expect = e-159
Identities = 300/306 (98%), Gaps = 1/306 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttgatttcagggtctcctactctactgaatggcatgtatattttgagacgtt 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcttttgatttcagggtctcctactctactgaatggcatgtatattttgagatgtt 264
Query: 65 cctcatgggcccatcttttttattacaaatcccatttttattactgtagtgacatggctt 124
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctcatgggcctatcttttt-attacaaatcccatttttattactgtagtgacatggctt 323
Query: 125 cttggctgtagaaaagagcagatgggatgattaacagcagcagctgtccagaacattaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttggctgtagaaaagagcagatgggatgattaacagcagcagctgtccagaacattaca 383
Query: 185 tgcataccatgaattagttctaaatgctacatgccccagcttcctaatactgtaatgcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcataccatgaattagttctaaatgctacatgccccagcttcctaatactgtaatgcct 443
Query: 245 atttctttgtttctaaaatgttaacaaatcacagtaggaaggttagcttaggctgggatg 304
||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 444 atttctttgtttctaaaatgttaacaaatcacaatagaaaggttaggttaggctgggatg 503
Query: 305 tagccc 310
||||||
Sbjct: 504 tagccc 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 709
Length adjustment: 9
Effective length of query: 301
Effective length of database: 700
Effective search space: 210700
Effective search space used: 210700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_a16.g1 MSMg01no300_a16.g1 CHROMAT_FILE:
MSMg01no300_a16.g1 PHD_FILE: MSMg01no300_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:07 2005
(281 letters)
>mm_chr9_66043782_66044462
Length = 681
Score = 513 bits (265), Expect = e-150
Identities = 278/283 (98%), Gaps = 2/283 (0%)
Strand = Plus / Minus
Query: 1 agcaggacccagctccatagaaaatggagagctagaaataagtcaggcatctcttagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agcaggacccagctccatagaaaatggagagctagaaataagtcaggcatctcttagtaa 283
Query: 61 gaaccagacaattagacggtctggatgcaatggatgattatatagatattcaaatgatga 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 282 gaaccagacaattagacggtctggatgcaatggatgattatatagatatacaaatgatga 223
Query: 121 acaccagggagggcatgtctgtgctagtgagatggctggatggctaaaggcttcctacca 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 acaccaaggagggcatgtctgtgctagtgagatggctggatggctaaaggcttcctacca 163
Query: 181 aacctgatgacctgagtttggtccctaggacctggcaagaaaa--gagagatgactccca 238
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 162 aacccgatgacctgagtttggtccctaggacctggcaagaaaaaagagagatgactccca 103
Query: 239 caagttgtcctctgacatccacatgtgccagcatatgcacaca 281
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 caagttgtcctctgacatccacatgtgccagcatatgcacaca 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
