BAC Information

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BAC

Clone NameMSMg01-300B22
Chromosome9 (Build37)
Map Location 51,913,051 - 51,913,342
singlet/doubletsinglet
Overlap genenone
Upstream geneBtg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik
Downstream geneZc3h12c, LOC100042876, AI593442, Gm1715, Ddx10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300B22.T7 (MSMg01no300_b22.b1)MSMg01-300B22.TJ (MSMg01no300_b22.g1)
ACCAG426694AG426695
length742739
length of high quality
(start - end)
239 (128 - 366)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no300_b22.b1 PHD_FILE: MSMg01no300_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:13 2005CHROMAT_FILE: MSMg01no300_b22.g1 PHD_FILE: MSMg01no300_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGCTATTTTTGCCTATTGGTAAGTCATTCCATCACCATCAGTTG
AAGAGCTGGCCTCCCTCCTTTGACCCTCTTATCTTTGTGCTTTTGCCACA
CTCAAGCTGAGGGGACAGGCTAGTTAATACGGTGCTTGCCTTGCAAGCAT
ACAGAACTGAGTTCAGTTCCCAAAGCCCATGTAAAATGCATCAAGCATGG
TGGTGTATACTTAGAACACCTACTTCTGGAAAGGTAGAGACAAAAGTGTT
CCTGGGGCTCACTGGCCTGTCAGTCTAGAAGAGTTAGCAAGTTAGAGGCC
TGTGAGAGACCCTGTCNCTACTTTAACCCCCCTCCCCAGAACCTGAGTTG
ACCTTTGGCCTCCACAAACCCCCCTCACTCACACACACACACACACACNC
GTATCACATCACATGCACACATATGACTACCCCTTACATATACACACACA
CTCCTACCTGGATTTATCCTCAATGTAGTGTCTTTGGCCTCCACAACCCC
CACACACACACACATATCACATCACATGCACCTGCACACATATGACTACC
CCCTACATATACACACACACTCCTACCTGGATTTATCCTCAATGCAGTGT
CTTTCTGGGCTCTCTCTCTTTTCCATTGGTTGGTCACATTGTCTTCATCA
CTGTCTATTTGTGGCAAATCCTCATCTAATATAACGTACGCN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAAAAGGCAGACCCCCCCTCCAAGT
GGGGGAAACTAGACTTTCTGCAGACAGCCAGCTCCCCCAAAAGAAAACAT
GAGAAACAGTGTTGTCCACAAACTCTGCAGTCAATGCCTGCATCTTCCCG
GGAAGGAATGCAGAATGCATCTTGAGCCAGGGCCAGAATGCTCATCTTAT
GTATGGGTTCTCTGGGGAGGAGGGAGACCTCCCTAGCCATGTGTTCCTTC
AGGGAGCATGTGAGGATGTTGGCACCTGGAAGATGTTGTCTTCTCTCTCT
CTCCCATGGCAACACTGTTTTCTTTGCCCGCCTCCCCCATCAACTTCCAG
TCCATTTGTCCAGTGATATGAGAAGAGTCATAAAAACAACGTGGGCAGAG
AGGGCCTGCTGTGTTATGCCTCTGCGTAGGGTGCTGGGCTTGGTGAGCAC
TGAACATAACACTCTTAATCCTCCTGCCTCCGTGGCCTATCTGTGCTGTC
CAGTCACCTTCTGTTTAATAGTAAAAGCCGGTGACTTCTTTCCCTTTTCC
AAGACATATTACAAACAGAAATTAGGTGCAGAAATGGAGGTATATGGCTC
ATTCCTTCATTTCAAACACCCTAGTCTACAGCAGAAGAGTAATGTCCCTG
TCTGGAGCAACTGCTTCAAGGTTCAAGCCCCGATCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_b22.g1 MSMg01no300_b22.g1 CHROMAT_FILE:
MSMg01no300_b22.g1 PHD_FILE: MSMg01no300_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:13 2005
         (292 letters)



>mm_chr9_51912851_51913542
          Length = 692

 Score =  514 bits (266), Expect = e-150
 Identities = 286/294 (97%), Gaps = 4/294 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaaaggcaga--ccccccctccaagtgggggaaactagactttctgcagacagccagc 58
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 caaaaaggcagaccccccccctccaagtgggggaaactagactttctgcagacagccagc 433

                                                                       
Query: 59  tcccccaaaagaaaacatgagaaacagtgttgtccacaaactctgcagtcaatgcctgca 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 432 tcccccaaaagaaaacatgagaaacagtgttgtccacaaactctgcagtcaacgcctgca 373

                                                                       
Query: 119 tcttcccgggaaggaatgcagaatgcatcttgagccagggccagaatgctcatcttatgt 178
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 372 tcttcccgggaaggaatgcagaatgcatcttgagccagggccagagtgctcatcttatgt 313

                                                                       
Query: 179 atgggttctctggggaggagggagacctccctagccatgtgttccttcagggagcatgtg 238
           | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 312 acgggttctctggggaggagggaaacctccctagccatgtgttccttcagggagcatgtg 253

                                                                 
Query: 239 aggatgttggcacctggaagatgttgtcttctctctctctcccatggcaacact 292
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 252 aggatgttggcacctggaagatgttgtct--tctctctctcccatggcaacact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)