XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTCTTTATCAATCTTAGTACACGGTGATTTATATAACATCTCACTTCAT
ATTGGATCTTTACAGACATGAGATGTCTGTGATGTAAATAAACATAGTCA
AAACTTCAATATCGGTGGTCAACAGTAATTCAACATGATCCAAATTAATC
TAAGACCAGACCAAGCACTGAAAAAAATGATTTTTAAGAATTTAAGAGAT
AAAAACATAAAAATATCTTAAAAGAAACTCAGAACATAGGAACAAAAATA
CAAATATGTTCAGCCATACACAGTCTAGACTGCGTTGCCTCTCTCTATTT
TTTTGCATTCTTTTATCTTTACCCACCACCCCATATAATAGTGTTTAAGA
TGTGGTTTTCATATTTAATATGAAGTGGTAGAGTGAACCATATTAAAAAG
CAAAACCCACAGACACATGGAATCTCTGGATTAAGCATTTCTTAAGATAC
AAAGATCCTTTGTCTTAAGGGAAGAAGTGGATATTTTTACAAATACAACA
TCATTGAAAGTATGCTGGAGACCTCCTGGGTAACCCGCTGTCTTGTTGTG
TAAGCCAAGTCCCTTCCGTGACCAGTAGAGTCACAGCTTCCTAAATACAA
TACCCAGGTATATGATGCCATTACTTACCCCCGACGAAATGTTTTTCCAT
GTCTGCTACAGTTTTAAGTGCCCCATTCTTATCT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATGTCTCATGCTCCGTTCTTCAAAGGAC
ATTTCACAAGTTATCTGATCTGATGCTCACTGACAGGGCCCATCAGATGC
TTGGCAGAACGAAACGTTCAGAAGAATTTCACAAGGTGAGTAAACTTGGA
TCTCAGAGTTTCAAAGAGGCTGCTATTTTCAGCTTGCTCCTTGTTCTATT
GGGAACTGATATTGTAGGGTTTAAGTGTTTACATAATGTGCCTGAAGGCT
GTAGGCAGAAAGATTGGCATGATCGCCACACCTACACCCACCATGAGATA
GGACGCCTGTGGGATAATTGAGCTAGACCTAAATTTAATTTTTTTCTTTT
TCTTTTTCAAACCATGATCTCACAAAGCCAAGGCCGAGCTCATACTCAAT
GGAGTCTAAGCAAGTCTTGGACTCCTGCACCTCCTTGCCAATTATTAGGA
TTATAAAGGTGTGGCTTCCATAGCTAGCTTCTAAATTTGAGTATCCTGAT
TCAGGTATATTTCTTATGGATGCTGGTAAGTAAGTGGTGGTTGCTTCCAT
ATAGCATTTCTTATCTATACCACGCTTTTTATAATCCCATCAATCTATGC
AGTATATACCTTACCCCGTATTACCCCTCCCGATTGTATTGCTCACATCA
TCTGACTGATATGTGCCACACTTCGTAGTATCCATGGAC

Query= MSMg01no301_m09.b1 MSMg01no301_m09.b1 CHROMAT_FILE:
MSMg01no301_m09.b1 PHD_FILE: MSMg01no301_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:15 2005
         (323 letters)



>mm_chr9_112132584_112133306
          Length = 723

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattctttatcaatcttagtacacggtgatttatataacatctcacttcatatt 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatttattctttatcaatcttagtacacggtgatttatataacatctcacttcatatt 263

                                                                       
Query: 64  ggatctttacagacatgagatgtctgtgatgtaaataaacatagtcaaaacttcaatatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggatctttacagacatgagatgtctgtgatgtaaataaacatagtcaaaacttcaatatc 323

                                                                       
Query: 124 ggtggtcaacagtaattcaacatgatccaaattaatctaagaccagaccaagcactgaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtggtcaacagtaattcaacatgatccaaattaatctaagaccagaccaagcactgaaa 383

                                                                       
Query: 184 aaaatgatttttaagaatttaagagataaaaacataaaaatatcttaaaagaaactcaga 243
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 aaaatgatttttaagaatttaagagataaaaatataaaaatatcttaaaagaaactcaga 443

                                                                       
Query: 244 acataggaacaaaaatacaaatatgttcagccatacacagtctagactgcgttgcctctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acataggaacaaaaatacaaatatgttcagccatacacagtctagactgcgttgcctctc 503

                            
Query: 304 tctatttttttgcattc 320
           |||||||||||||||||
Sbjct: 504 tctatttttttgcattc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no301_m09.g1 MSMg01no301_m09.g1 CHROMAT_FILE:
MSMg01no301_m09.g1 PHD_FILE: MSMg01no301_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:15 2005
         (519 letters)



>mm_chr9_112200530_112201448
          Length = 919

 Score =  980 bits (507), Expect = 0.0
 Identities = 516/519 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtctcatgctccgttcttcaaaggacatttcacaagttatctgatctgatgctcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 aatgtctcatgctccgttcttcaaaggacatttcacaagttatctgatctgatgctcact 660

                                                                       
Query: 61  gacagggcccatcagatgcttggcagaacgaaacgttcagaagaatttcacaaggtgagt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 659 gacagggcccatcagatgcttggcagaacgaaacgttcaaaagaatttcacaaggtgagt 600

                                                                       
Query: 121 aaacttggatctcagagtttcaaagaggctgctattttcagcttgctccttgttctattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aaacttggatctcagagtttcaaagaggctgctattttcagcttgctccttgttctattg 540

                                                                       
Query: 181 ggaactgatattgtagggtttaagtgtttacataatgtgcctgaaggctgtaggcagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ggaactgatattgtagggtttaagtgtttacataatgtgcctgaaggctgtaggcagaaa 480

                                                                       
Query: 241 gattggcatgatcgccacacctacacccaccatgagataggacgcctgtgggataattga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 479 gattggcatgatcgccacacctacacccaccatgagataggacgcctgtgggataactga 420

                                                                       
Query: 301 gctagacctaaatttaatttttttctttttctttttcaaaccatgatctcacaaagccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gctagacctaaatttaatttttttctttttctttttcaaaccatgatctcacaaagccaa 360

                                                                       
Query: 361 ggccgagctcatactcaatggagtctaagcaagtcttggactcctgcacctccttgccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggccgagctcatactcaatggagtctaagcaagtcttggactcctgcacctccttgccaa 300

                                                                       
Query: 421 ttattaggattataaaggtgtggcttccatagctagcttctaaatttgagtatcctgatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttattaggattataaaggtgtggcttccatagctagcttctaaatttgagtatcctgatt 240

                                                  
Query: 481 caggtatatttcttatggatgctggtaagtaagtggtgg 519
           ||||||||||||||||||| |||||||||||||||||||
Sbjct: 239 caggtatatttcttatggaggctggtaagtaagtggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)