BAC Information

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BAC

Clone NameMSMg01-301N15
Chromosome9 (Build37)
Map Location 76,393,663 - 76,393,979
singlet/doubletsinglet
Overlap genenone
Upstream geneTmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301N15.T7 (MSMg01no301_n15.b1)MSMg01-301N15.TJ (MSMg01no301_n15.g1)
ACCAG427920AG427921
length766759
length of high quality
(start - end)
320 (40 - 359)234 (370 - 603)
definitionCHROMAT_FILE: MSMg01no301_n15.b1 PHD_FILE: MSMg01no301_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:21 2005CHROMAT_FILE: MSMg01no301_n15.g1 PHD_FILE: MSMg01no301_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCG
TGCCTCATCAAGCACACTTTGTTCTCAGGTTTAAGTTGAGTAGCTGTCCC
GTATCCCTGGAGAGGTCAAGTTCATTATGTCACATGAGGCTCTCTAACTT
TGGATGCCTTGAGCTTGTAAGGGAAATCTATTTAACTGGCTGTGATGGAT
ATTGAACTGCAGCTCTATTGATGGCATTTAGGATATGACATGTGTCATTT
CGCTTCTCTAGCCCTTTAAATGGTAGTTAATGCGAATGCTGTCAAAGTGA
TACATGGCATATATCATATATATCAGCGCGCAGAGTTGTAACTGACCTTC
ATTTTCTTATTTTTTCTCACCCCCCCTCTTGCCTCTGCCCAGATGAACAT
TTGAAAGTTCCCCTCATCCAACACCAGAAACATGGAGGCTTCATCAATGC
TTTCATCACTAAATGATGAGTGCCGATCTGACAACTATGTCGAGCCGCAC
TACAAGGAGTGGTATCGCGTGGCAGTTGATACTCTAATTGAACATGGGTT
AGAAGCCTACCAAGAGTTTCTCATCAAGGAGCGAGTTTCAGACTTTCTGG
CAGAGGAAGAGATTAATTATATTTTGAAAAATGTCCTGAAGATTGCACAA
AATACAGAACATGGTTCTGAAAGTTCCTGGGATGACGGCTCGTCTTCAGT
AACTTACTGGCCCATGCTATCTGAAGTGGAGGCTCCAAATCTTGTACTTA
GGCTGTTCATTTCTGA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTACAAAAATTCCATATGATTTGCTTATAGTTATTTGATAATCTATA
TTATCTTTTCTTTCCCATTGTTATTTCATGATGTAAAGAAACTAGATGTC
AAAAGAAAAGAGGGATTAAGGTAATGGGCTACCACTAGGTGGCAGTAGCA
ACAGATGGTGGAAGAGCACTCAGGTGTATGACCAACATAGTCAGTGTTTA
TCAAACAAAAGTCCTCAGGCTGTGAAACCTAAGCTGGGGCTGTAGAGGGG
ACTGGACTTTGTTCAATAGTGAAGAATGTCTGAAGGGTATATGAGTCTAG
GTCAGATTTAGCATCGACTGGCTTTTGGGGCATTTAAAAAAGCAGTATCT
TAATTTCTCTTTCATGTAGTTCATTGTTGTTTGGTATGCTTAAGGATAAA
CTTAACTGAGAAAAATAATAAGGAAAAACACCCTGATGAAGCTCAAGTTA
CAAATTTCTGTAAAAGTATCTCATTCTCATGGATAGAAGAGTAAATAAAT
ATTAAGATGTCCACACTAGCCAAGTGGTTTACAAACTCAAAACAGTCCCT
GTTAAAAACATTAGACCCAGTTGTTTCTCATAATCAGGAAAGATACTTGA
AGTTCCTTTTTTTTCTCAAGGTATCAACACACTGGTTTTGACTATTGTAA
TAAAATGAAGATATTTACTTACTGACTTCAAAATCCCCAGAGGTATTGTA
TAACTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_n15.b1 MSMg01no301_n15.b1 CHROMAT_FILE:
MSMg01no301_n15.b1 PHD_FILE: MSMg01no301_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:21 2005
         (320 letters)



>mm_chr9_76393460_76394179
          Length = 720

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcgtgcctcatcaagcacactttgttctcaggtttaagttgagtagctgtcccgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggaattcgtgcctcatcaagcacactttgttctcaggtttaagttgagtagctgtcccgt 461

                                                                       
Query: 64  atccctggagaggtcaagttcattatgtcacatgaggctctctaactttggatgccttga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 atccctggagaggtcaagttcattatgtcacatgaggctctctaactttggatgccttga 401

                                                                       
Query: 124 gcttgtaagggaaatctatttaactggctgtgatggatattgaactgcagctctattgat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gcttgtaagggaaatctatttaactggctgtgatggatattgaactgcagctctattgat 341

                                                                       
Query: 184 ggcatttaggatatgacatgtgtcatttcgcttctctagccctttaaatggtagttaatg 243
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 340 ggcatttaggatatgacatgtgtcatttcgcttctctagccctttaaacggtagttaatg 281

                                                                       
Query: 244 cgaatgctgtcaaagtgatacatggcatatatcatatatatcagcgcgcagagttgtaac 303
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 280 cgaatgctgtcaaagtgatacatggcatatatcatagatatcagcgcgcagagttgtaac 221

                            
Query: 304 tgaccttcattttctta 320
           |||||||||||||||||
Sbjct: 220 tgaccttcattttctta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)