BAC Information

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BAC

Clone NameMSMg01-302H18
Chromosome9 (Build37)
Map Location 54,685,882 - 54,705,871
singlet/doubletdoublet
Overlap genenone
Upstream geneSln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1
Downstream geneIreb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302H18.T7 (MSMg01no302_h18.b1)MSMg01-302H18.TJ (MSMg01no302_h18.g1)
ACCAG428360AG428361
length755754
length of high quality
(start - end)		714 (42 - 755)286 (69 - 354)
definitionCHROMAT_FILE: MSMg01no302_h18.b1 PHD_FILE: MSMg01no302_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:08 2005CHROMAT_FILE: MSMg01no302_h18.g1 PHD_FILE: MSMg01no302_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,685,882 - 54,686,590)(54,705,586 - 54,705,871)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
TCTGGAGCCCCATTCTTCCGCAGCAGCCTCCCTCTGGCCTGCTGTGCCCT
CCACAGGGTCTCCCTCTGGCTCCTGCCGTCTGCTACACCAATGCTCTCTT
GCTCTCTCCTGGCTATCTCTGACTCTAACTTGGCAGTCCCATCTCTTCAG
CTCTCAGCCTCCTCCTGGAGCTTACAGGAACACCTATAGGGTGTCATTTG
TGACCCTTTTTCTCTTCCTCTGTCAAGAATCAGATTTTATTACTACAGCT
TGGCCTCATTACAGATCAGTGGCCAAAAATTGGCGCCCTTGATTTCCAAA
TTCTCAAAGATTGTAACAACTTCTGCCACAACAAAGGATCCTAGAGTCTC
TTATCGCTAAGGTTCAACTTCCCACTCTTAAAAAAATCTTTTCTCTAAAT
GATTTCTCTGCAGTCTGCTCTTAAAAATATCTCTTAGGACTATACTGTAA
ACTCTATCTCGGGATTTGTAAATTCATTGAATATGGTTAAGAATCTATAA
AATCTGTAACAAAATTTGGCTTTAGACTTATAACAAAAGGTTTATAATTA
AAGTCTATGATATATAATTTTAATTTGCTGCAATAGATAACTGATCACAT
ACTAGCTATGTGATTCAACTTTTGTCTAGAATATACTGTACATGTAACTT
AGACTCTTGTTTAGAAAAAATAGATGTTTCTAAATAGCAACCATGTGGCT
CTCCT

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTCTGAGATGAGATTTGAGTTTTTTTGTTGA
CACATCAGTACTGGTGAAAGCAGAGAAAAGAGATTTATTGATCATTGTGG
GCACACTGGGGAAAAAAGATGAAGAGATTCAGTGGCCCTAGGTCCTTCAT
CTATAGGGCACTGATGTGAGCTTTGGGTTTAGATGTTAGAGTAATTGGGG
CAAGGGGAGAGCTATGCCTAGTTAAGTAGGCTTGGTTAGGCTCTTATGGT
TGGGTTATCACTGCTGCACTAGTTCTGTTTGGCTTCCTAAGACATTGCTT
TCCATTGGTGGGAAACCCCACTGCAGCATCAGCATCTGAGATTAATGGCC
TCACTGGGGAGTCATCCATTACTAGGGTGGCAGTTTCAATCCCTGTCATA
GAGGTGCTAATAGGTCCTGTTGTTCCTAGAATCGAAGTTGAATGCAGATC
TAGGGCAATGACCCGAGGCATTTAGGGTCTCCTTGGAAGTCTGTAAACAC
TGGTAACACTGTCCTAATAGGGATAAAGAGACTCCAAGGAGACTCCTGCG
TTGCTGCCTCTGACTATCACACTTCTGACACTATGAAAATTTCCCCATGA
TCCACATGCTGTAAGAATGAAAAATGCTGATTTCTGACCCCTGTCAAGGG
AGTATCTCGTCTCTGGGAAATATTCATCTCAATCTTCCTTTTCATATCCC
CTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_h18.b1 MSMg01no302_h18.b1 CHROMAT_FILE:
MSMg01no302_h18.b1 PHD_FILE: MSMg01no302_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:08 2005
         (714 letters)



>mm_chr9_54685677_54686790
          Length = 1114

 Score = 1340 bits (693), Expect = 0.0
 Identities = 705/709 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   aatttctggagccccattcttccgcagcagcctccctctggcctgctgtgccctccacag 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatttctggagcccaattcttccgcagcagcctccctctggcctgctgtgccctccacag 265

                                                                       
Query: 66  ggtctccctctggctcctgccgtctgctacaccaatgctctcttgctctctcctggctat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggtctccctctggctcctgccgtctgctacaccaatgctctcttgctctctcctggctat 325

                                                                       
Query: 126 ctctgactctaacttggcagtcccatctcttcagctctcagcctcctcctggagcttaca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctctgactctaacttggcagtcccatctcttcagctctcagcctcctcctggagcttaca 385

                                                                       
Query: 186 ggaacacctatagggtgtcatttgtgaccctttttctcttcctctgtcaagaatcagatt 245
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 386 ggaacacctatagggtgtcaattgtgaccctttctctcttcctctgtcaagaatcagatt 445

                                                                       
Query: 246 ttattactacagcttggcctcattacagatcagtggccaaaaattggcgcccttgatttc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttattactacagcttggcctcattacagatcagtggccaaaaattggcgcccttgatttc 505

                                                                       
Query: 306 caaattctcaaagattgtaacaacttctgccacaacaaaggatcctagagtctcttatcg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caaattctcaaagattgtaacaacttctgccacaacaaaggatcctagagtctcttatcg 565

                                                                       
Query: 366 ctaaggttcaacttcccactcttaaaaaaatcttttctctaaatgatttctctgcagtct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctaaggttcaacttcccactcttaaaaaaatcttttctctaaatgatttctctgcagtct 625

                                                                       
Query: 426 gctcttaaaaatatctcttaggactatactgtaaactctatctcgggatttgtaaattca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gctcttaaaaatatctcttaggactatactgtaaactctatctcgggatttgtaaattca 685

                                                                       
Query: 486 ttgaatatggttaagaatctataaaatctgtaacaaaatttggctttagacttataacaa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttgaatatggttaagaatctataaaatctgtaacaaaatttggctttagacttataacaa 745

                                                                       
Query: 546 aaggtttataattaaagtctatgatatataattttaatttgctgcaatagataactgatc 605
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 746 aaggtttataattaaagtctatgatatataattttaatttgctgcaatagataattgatc 805

                                                                       
Query: 606 acatactagctatgtgattcaacttttgtctagaatatactgtacatgtaacttagactc 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 acatactagctatgtgattcaacttttgtctagaatatactgtacatgtaacttagactc 865

                                                            
Query: 666 ttgtttagaaaaaatagatgtttctaaatagcaaccatgtggctctcct 714
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ttgtttagaaaaaatagatgtttctaaatagcaaccatgtggctctcct 914


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no302_h18.g1 MSMg01no302_h18.g1 CHROMAT_FILE:
MSMg01no302_h18.g1 PHD_FILE: MSMg01no302_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:08 2005
         (286 letters)



>mm_chr9_54705386_54706071
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctgagatgagatttgagtttttttgttgacacatcagtactggtgaaagcagagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cttctgagatgagatttgagtttttttgttgacacatcagtactggtgaaagcagagaaa 427

                                                                       
Query: 61  agagatttattgatcattgtgggcacactggggaaaaaagatgaagagattcagtggccc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 426 agagatttattgatcattgtgggcacactgggaaaaaaagatgaagagattcagtggccc 367

                                                                       
Query: 121 taggtccttcatctatagggcactgatgtgagctttgggtttagatgttagagtaattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 taggtccttcatctatagggcactgatgtgagctttgggtttagatgttagagtaattgg 307

                                                                       
Query: 181 ggcaaggggagagctatgcctagttaagtaggcttggttaggctcttatggttgggttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggcaaggggagagctatgcctagttaagtaggcttggttaggctcttatggttgggttat 247

                                                         
Query: 241 cactgctgcactagttctgtttggcttcctaagacattgctttcca 286
           |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cactgcagcactagttctgtttggcttcctaagacattgctttcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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