TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCCTTGTTCACGCAGGTAAGTGCCATTCATGCCAACTTCCAC
ACCATCCTTGCCCTCATTGGTGCATCTCATACATTTAAAGGGTATTAATG
AAGGGGTAGAAGATAAAGTCAGGCTCTGAAGAGTCAGATGCTGATAGCAA
CTTAGAGTGAGAGAGAATCCATCTATGGGATAGGTTGAGGAGAATGTGAA
GTAAGCTACGAAAGTGGAGTCTCCAAAACCAGAGATTCTTTACGTTTAGA
GAGGGTTTCCAAGATAGAGCAGAAACATGAGAGACATACTTCAAATTGGG
TGTTGTGATCTTGGGCCACTTCTGTGACCTGCCTGTCCATACGTATTCTC
ACAGACACACCGTCTTCTCCATCCATTGACCGGGTGGAACCATACTCCAG
CACAGCGCAGGTGCAGTTTGATGAGCCAGAGGCCACAGGGGGCGTGCCCA
TTCTCAAGTACAAGGCTGAGTGGAAGTCGCTGGGCGAAGAATCCTGGCAT
TTCAAGTGGTATGATGCCAAAGAAGGTGAGTCTAGTACACACCCTCAAAT
TCATCAGATCCTTGTTGACTGTGTAGGTGGGGAGTGAGCAGGATGTCACC
ATCTGCCATCCCATCCAGCTTCCTCTAGAGAAAGGAACTCTTCATCTAGA
AATAGGTCAGGGTCATTCTTCCATN

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGGGAAGGCAACCGTGGTTAGGAG
CATGTCTTAGTGGGCAGTAAGTCCCTTCTTGAAAATAAGCCATAACATGA
ACACTGGTGTAATGCATGTTGTCACGTGTCCTTGTAGGTCACTGAGAAGG
AATCTGGGACTTGAAGTGGGGTTGCTTCCCACTACATTTCTGACACAAGT
ATGTGTGTCAGTCACAAAGTGTTCTCCAAGACCTCCTGTCTGGGGGTGGG
CTGGCCCTGCTAACTCTGTGGTAGGTTAGAAAGAACATCAGAACAGCCCA
AGAGTAAGAACACTTTGTCCTCCCCCGCCGTCCCCCAGAGCTTACTGATC
CAAGGGTGCCTATGGTGGAAAGGAAAAAAAGAAAAAAGCCTTGGGGGGGT
GGTCTGTGGAGATAAGGCTCAATGGGGAACTCCAGGTGACTGCCTCAACT
TCCCCAGTCTGTTCCTGCTGGATGTTCCAAGTGCCTGTGTTGATGATGTA
AACCCTACCTGCTGCTACTTGTTCTTTTACCAGATACTATGTTCTGCTTG
TAGCTGTCTTTGAGAACCCCAGCTCTCAAGTTGTTCCCTTTTTCTCCCCT
CCCCCCTCCATGATTTTTTTCCCCCTCTCCTTTGTTTCCATTGTTTTGCT
ATCTGTTTCATAAACCCACCCC

Query= MSMg01no302_k16.b1 MSMg01no302_k16.b1 CHROMAT_FILE:
MSMg01no302_k16.b1 PHD_FILE: MSMg01no302_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:21 2005
         (615 letters)



>mm_chr9_49352466_49353480
          Length = 1015

 Score = 1145 bits (592), Expect = 0.0
 Identities = 607/612 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatccttgttcacgcaggtaagtgccattcatgccaacttccacaccatccttg 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ggaattcatccttgttcaagcaggtaagtgccattcatgccaacttccacaccatccttg 756

                                                                       
Query: 64  ccctcattggtgcatctcatacatttaaagggtattaatgaaggggtagaagataaagtc 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ccctcattggtgcatcttatacatttaaagggtattaatgaaggggtagaagataaagtc 696

                                                                       
Query: 124 aggctctgaagagtcagatgctgatagcaacttagagtgagagagaatccatctatggga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aggctctgaagagtcagatgctgatagcaacttagagtgagagagaatccatctatggga 636

                                                                       
Query: 184 taggttgaggagaatgtgaagtaagctacgaaagtggagtctccaaaaccagagattctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 taggttgaggagaatgtgaagtaagctacgaaagtggagtctccaaaaccagagattctt 576

                                                                       
Query: 244 tacgtttagagagggtttccaagatagagcagaaacatgagagacatacttcaaattggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tacgtttagagagggtttccaagatagagcagaaacatgagagacatacttcaaattggg 516

                                                                       
Query: 304 tgttgtgatcttgggccacttctgtgacctgcctgtccatacgtattctcacagacacac 363
           ||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||
Sbjct: 515 tgttgtgatcttgggccacatctgtgacctgggtgtccatacgtattctcacagacacac 456

                                                                       
Query: 364 cgtcttctccatccattgaccgggtggaaccatactccagcacagcgcaggtgcagtttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgtcttctccatccattgaccgggtggaaccatactccagcacagcgcaggtgcagtttg 396

                                                                       
Query: 424 atgagccagaggccacagggggcgtgcccattctcaagtacaaggctgagtggaagtcgc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atgagccagaggccacagggggcgtgcccattctcaagtacaaggctgagtggaagtcgc 336

                                                                       
Query: 484 tgggcgaagaatcctggcatttcaagtggtatgatgccaaagaaggtgagtctagtacac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgggcgaagaatcctggcatttcaagtggtatgatgccaaagaaggtgagtctagtacac 276

                                                                       
Query: 544 accctcaaattcatcagatccttgttgactgtgtaggtggggagtgagcaggatgtcacc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 accctcaaattcatcagatccttgttgactgtgtaggtggggagtgagcaggatgtcacc 216

                       
Query: 604 atctgccatccc 615
           ||||||||||||
Sbjct: 215 atctgccatccc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no302_k16.g1 MSMg01no302_k16.g1 CHROMAT_FILE:
MSMg01no302_k16.g1 PHD_FILE: MSMg01no302_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:21 2005
         (288 letters)



>mm_chr9_49268827_49269514
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgggaaggcaaccgtggttaggagcatgtcttagtgggcagtaagtcccttcttgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgggaaggcaaccgtggttaggagcatgtcttagtgggcagtaagtcccttcttgaaa 260

                                                                       
Query: 61  ataagccataacatgaacactggtgtaatgcatgttgtcacgtgtccttgtaggtcactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagccataacatgaacactggtgtaatgcatgttgtcacgtgtccttgtaggtcactg 320

                                                                       
Query: 121 agaaggaatctgggacttgaagtggggttgcttcccactacatttctgacacaagtatgt 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 agaaggaatctgggacttgaagtggggttgcttcccactccatttctgacacaagtatgt 380

                                                                       
Query: 181 gtgtcagtcacaaagtgttctccaagacctcctgtctgggggtgggctggccctgctaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtcagtcacaaagtgttctccaagacctcctgtctgggggtgggctggccctgctaac 440

                                                           
Query: 241 tctgtggtaggttagaaagaacatcagaacagcccaagagtaagaaca 288
           |||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtggtaggggagaaagaacatcagaacagcccaagagtaagaaca 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)