BAC Information

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BAC

Clone NameMSMg01-303B12
Chromosome9 (Build37)
Map Location 39,600,983 - 39,601,369
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968
Downstream geneOlfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303B12.T7 (MSMg01no303_b12.b1)MSMg01-303B12.TJ (MSMg01no303_b12.g1)
ACCAG428784AG428785
length721716
length of high quality
(start - end)		671 (51 - 721)387 (330 - 716)
definitionCHROMAT_FILE: MSMg01no303_b12.b1 PHD_FILE: MSMg01no303_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:54 2005CHROMAT_FILE: MSMg01no303_b12.g1 PHD_FILE: MSMg01no303_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTACTATACCCATCTGGCCCTGAGCTTTTTTTGTTCGTT
TGTTTTGTTTTTGGTTGGAAGACTCTTAAAGACTGCTTCCATTTCCTTGG
ATGTTATGAAACTGTTCATATAGTTTACTTGATCTTGATTTGACTCTGGT
ATGTGCTATCTGTCTAGAAATTCATCCATTTCACATTTTGTTTAGATTTT
CTAGTTTTTTGGAGTACAAGCTTTTGAAGTAAGACCTAATGATTTTTTGA
ATTCCCTGTTTTTTATGTTTTTATGTTTTCATTTCTGATTTTGTTAATTT
GGATACTGTCTCAGTGCCTTTTAGTTAGCTTGGTTGAGTGTTTGTTCATC
CTGTTCATTTTCTCAAACAAAACAAAACAAAACAAAAAAAACCAGCTCTT
GGTTTTGTTGAATTTTTGTATTGTGCTTTTCAGTTTTAATTGATGGATTT
CATCCTGGAGTTTGACTATTTCCTGCCATCTCCTACTCTTGTGTTTCTTT
TTGTTATAAAGCCTTCAGTTGTGCTGTTAAGTTGCTAATATGAATTCTCT
CCAATTTCTTTTTTTCTGCTTTTTTTAATTAGGTATTTTCTTCATTTACA
TTTCCAATGCTATCCCAAAAGTCCCCCATGCCACCCTCCAACTCCCCTAC
CCACCCACTCCTACTTCTTGG

NCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTACCAGCAAAATTCTTAAGCTTTTCTACAAAAATACAG
AATTGGTCCAGAATGGGAATGCTTCGTGTTACAGGACATAGCCAGCTGGA
GACTTAGAGGAATACAGTCATGGGGCAGTAAATTGGTTCCATCAAGCATT
GATTGTCGCAAGCAGAGCTACTCCAGAGTCTTTTGTGTGACTTTTGTATC
AGTGCATTTTCTATTCTTGCAGATGTGCCTTAAGTATTGAAATTCCTTGG
TCTTGTGATAACTGTCTGCTCNTTCATGAGATCTTGAACTGTTTTATGAA
ATGTTTGTACTATTGTAAAACACCACCAATAATATGAGATTCTAAATTCC
TTCCATCTTTGCCAGCAGGTATCATTTTATTACAACTCCTCCAATCAATG
TGTAGTTTTCTTTCACATTGGTTTTTATTTAAAGATTTCTAATAATTGGT
GATGGTACAAATATTATCAGGTGTTTTTGGTGATATATCTATCTCAACTA
GGAGAGTCATTATTCAAATTATCTGGCAATTTAACTGGATTTTTTGTTTT
CTTAAAAATTAAATTATAAAAGATCTTTAATTCTATTAATAGTTCTTCCT
CAGATACAATACTGAGATTTGTTTCCCATTAAGTATGTTATTTTTTTTTC
CTATGGTGTCCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_b12.g1 MSMg01no303_b12.g1 CHROMAT_FILE:
MSMg01no303_b12.g1 PHD_FILE: MSMg01no303_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:54 2005
         (387 letters)



>mm_chr9_39600783_39601569
          Length = 787

 Score =  727 bits (376), Expect = 0.0
 Identities = 385/388 (99%), Gaps = 2/388 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcttgaactgttttatgaaatgtttgtactattgtaaaacaccaccaataatatgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcttgaactgttttatgaaatgtttgtactattgtaaaacaccaccaataatatgaga 260

                                                                       
Query: 61  ttctaaattccttccatctttgccagcaggtatcattttattacaactcctccaatcaat 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaaattccttccatctttgccagcaggtatcattttattacaactcctccaatcaat 320

                                                                       
Query: 121 gtgtagttttctttcacattggtttttatttaaagatttctaataattggtgatggtaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtagttttctttcacattggtttttatttaaagatttctaataattggtgatggtaca 380

                                                                       
Query: 181 aatattatcaggtgtttttggtgatatatctatctcaactaggagagtcattattcaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatattatcaggtgtttttggtgatatatctatctcaactaggagagtcattattcaaat 440

                                                                       
Query: 241 tatctggcaatttaactggattttttgttttcttaaaaattaaattataaaagatcttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatctggcaatttaactggattttttgttttcttaaaaattaaattataaaagatcttta 500

                                                                       
Query: 301 attctattaatagttcttcctcagatacaatactgagatttgtttcccattaagtatgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attctattaatagttcttcctcagatacaatactgagatttgtttcccattaagtatgtt 560

                                       
Query: 361 atttttttt-tcctatggtgtcctttaa 387
           ||||||||| || |||||||||||||||
Sbjct: 561 attttttttatc-tatggtgtcctttaa 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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