NGGNTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTGCAGCTATGGTTGCCTGTACAAGATCAAGCCAGC
CAACATTCCAGAATGGATAGGAAAGGATGCATGAGGCTCTGCCCCTACCT
GAGGAGTGATTGGCAGTCCACGGCTGCTAAGAGAGGGGAATCATTTTTCT
TCAGGCTTGTGACCATTGTCAGACTCTGATGGATGGCCCCAAGGCCTCTA
GCAGGAGGGCAACACTAACTGGACTTAGTTATAAAAGGAAGAGGAAGAGG
AAGAGGGAAAGAAGAGATGTGGGCTGAAGAAAGACATGTTGGAGGAATTT
GGGGGTAGTGTGGGTGGATATGATAGNGANACNTNGNNTNNNNNNNNNNN
NNTGNNNNNNNNTNNNTTTTTTACCCCNTCCTTAATAAATACCTCTACAA
TCTATAAACAATAAACCCTTGCTTAACACACCTCATCACCTATATGATCT
TGCTGCCCACACTGTTGACCTGAGTTTTACCCCTGATTAACCTCGTGCCC
CTATATATTCTTACGCCCTCTTGATTTCCATTCGTTTTCACTGTCTTACC
CTTTTCCCCTTCTCCCCCTCTTTTTCCCCCCCTCTTTCTCCCCTTTTTTT
TTTTTTCTCACCCCACTTTCCCCTCTTTTTTCTTATCCGCCCCTATTTTA
TTTTCTACACCCTCCCAGCACCGCCATGTGTTT

TTTTTNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAACCATTTTGT
AAGATACGGAGGTTACAGTGATGAGAATTCTGTCCCTACTCTTGATAGTT
TTACATTTGNGGAGAAAGGAGACAAATGAAGACAGGGACGATGTGATTTC
TGAGACTCCCCCGAGTTTAATACAATGTAACTCCAGACAATGCTCGCTTA
CTGACCCGGGCCTGCCCTACAGCAACTGGCCTTTGGCCACTTTAGCAAGC
GCTGGGATTCTCTGTGCAGGCCTTGCCCAGCCCCTCGTGACGTCACTGGC
TCGCGCCATCCAATCATCGCCGTCTGGCTCCGCCCGCCCGCCCGTGCCTG
CGGGAGGCTCCGTGGCGTGTGTTGTGGCCCCGCTGAGCCACCGTACCTCC
CGCCTCCGCGCCCAACGTCCGCGTCGCCGTTCTGCGCCGCCGCCATGGCC
GACGTGGAGGACGGCGAGGAACCCTGCGTCCTTTCTTCGCACTCCGGGAG
CGCAGGCTCCAAGTCGGGAGGCGACAAGATGTTCTCTCTCAAGAAGTGGA
ACGCGGTAGCCATGTGGAGCTGGGACGTTGAGTGCGATACCTGTGCCATC
TGCAGGGTCCAGGTGATGGGTAAGCGATGCAGGCGAAGCCGGGACCGCGA
GCTGGG

Query= MSMg01no303_d14.g1 MSMg01no303_d14.g1 CHROMAT_FILE:
MSMg01no303_d14.g1 PHD_FILE: MSMg01no303_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:05 2005
         (623 letters)



>mm_chr9_96378590_96379611
          Length = 1022

 Score = 1174 bits (607), Expect = 0.0
 Identities = 619/623 (99%), Gaps = 1/623 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccaaccattttgtaagatacggaggttacagtgatgagaattctgtccctactctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 aaggccaaccattttgtaagatacggaggttacagtgatgagaattctgtccctactctt 763

                                                                       
Query: 61  gatagttttacatttgnggagaaaggagacaaatgaagacagggacgatgtgatttctga 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gatagttttacatttg-ggagaaaggagacaaatgaagacagggacgatgtgatttctga 704

                                                                       
Query: 121 gactcccccgagtttaatacaatgtaactccagacaatgctcgcttactgacccgggcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gactcccccgagtttaatacaatgtaactccagacaatgctcgcttactgacccgggcct 644

                                                                       
Query: 181 gccctacagcaactggcctttggccactttagcaagcgctgggattctctgtgcaggcct 240
           ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 643 gccctacagcaactggcctttggccactttagcaagcgctggggttctctgtacaggcct 584

                                                                       
Query: 241 tgcccagcccctcgtgacgtcactggctcgcgccatccaatcatcgccgtctggctccgc 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 583 tgcccagcccctcgtgacgtcactggcgcgcgccatccaatcatcgccgtctggctccgc 524

                                                                       
Query: 301 ccgcccgcccgtgcctgcgggaggctccgtggcgtgtgttgtggccccgctgagccaccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ccgcccgcccgtgcctgcgggaggctccgtggcgtgtgttgtggccccgctgagccaccg 464

                                                                       
Query: 361 tacctcccgcctccgcgcccaacgtccgcgtcgccgttctgcgccgccgccatggccgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tacctcccgcctccgcgcccaacgtccgcgtcgccgttctgcgccgccgccatggccgac 404

                                                                       
Query: 421 gtggaggacggcgaggaaccctgcgtcctttcttcgcactccgggagcgcaggctccaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gtggaggacggcgaggaaccctgcgtcctttcttcgcactccgggagcgcaggctccaag 344

                                                                       
Query: 481 tcgggaggcgacaagatgttctctctcaagaagtggaacgcggtagccatgtggagctgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcgggaggcgacaagatgttctctctcaagaagtggaacgcggtagccatgtggagctgg 284

                                                                       
Query: 541 gacgttgagtgcgatacctgtgccatctgcagggtccaggtgatgggtaagcgatgcagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gacgttgagtgcgatacctgtgccatctgcagggtccaggtgatgggtaagcgatgcagg 224

                                  
Query: 601 cgaagccgggaccgcgagctggg 623
           |||||||||||||||||||||||
Sbjct: 223 cgaagccgggaccgcgagctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1022
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1012
Effective search space:   620356
Effective search space used:   620356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)