BAC Information

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BAC

Clone NameMSMg01-303E08
Chromosome9 (Build37)
Map Location 96,379,126 - 96,379,360
singlet/doubletsinglet
Overlap genenone
Upstream gene2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7
Downstream geneLOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303E08.T7 (MSMg01no303_e08.b1)MSMg01-303E08.TJ (MSMg01no303_e08.g1)
ACCAG428910AG428911
length786736
length of high quality
(start - end)
322 (43 - 364)235 (122 - 356)
definitionCHROMAT_FILE: MSMg01no303_e08.b1 PHD_FILE: MSMg01no303_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:08 2005CHROMAT_FILE: MSMg01no303_e08.g1 PHD_FILE: MSMg01no303_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGCATTTACGGTTGCCTGTACAAGATCAAGCCAGCCAACATTCCAG
AATGGATAGGAAAGGATGCATGAGGCTCTGCCCCTACCTGAGGAGTGATT
GGCAGTCCACGGCTGCTAAGAGAGGGGAATCATTTTTCTTCAGGCTTGTG
ACCATTGTCAGACTCTGATGGATGGCCCCAAGGCCTCTAGCAGGAGGGCA
ACACTAACTGGACTTAGTTATAAAAGGAAGAGGAAGAGGAAGAGGGAAAG
AAGAGATGTGGGCTGAAGAAAGACATGTTGGAGGAATTTGGGGGTAGTGT
GGGTGGATATGATACCGCTTCTTTCTACTTCATCCTGCATTCTTCAAATC
ATATATTTATTTTTTCCCCCCTTAATATTATCTTTCACTTTTTTTCTATT
CACTCATTCATTCCCTTTTACTATCCCTTCCTTTCCCCTGTACTTTGTCT
GCCTCCACCTGTTCATATTACATTTTCCCTTTTCCCCATTTCCTCCTTTC
CCCTTTTACCCCTCACATCCCCTTCCTTCCTTCCTTTGTCCGCTCCTACC
CTATTTCTTCCTTTACCCTCATCCCCCTTTATTATTTTCCTTCTTTCTTT
TTTTTTACCCTCTTTCCTTCCTCCCTTATCTTTATCCATTGTTCCCTCCC
CATCCTTCCCCCCCCTCCCCATTTCTTATCCATTCCCCCCTTATTCCATT
CCCTTCCCCCCCCTTCCTCTTGCCTTTCTTTTCCCN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGCCAACCATTTTGTAAGATACGGAGGT
TACAGTGATGAGTTTTCTCTCCCTACTCTTGATAGTTTTACATTTGGGAG
AAAGGAGACAAATGAAGACAGGGACGATGTGATTTCTGAGACTCCCCCGA
GTTTAATACAATGTAACTCCAGACAATGCTCGCTTACTGACCCGGGCCTG
CCCTACAGCAACTGGCCTTTGGCCACTTTAGCAAGCGCTGGGATTCTCTG
TGCAGGCCTTGCCCAGCCCCTCGTGACGTCACTGGCTCGCGCCATCCAAT
CATCGCCTTTTGTTTCCGCCCGCCCGCCCGTGCCTGCGGGAGGCTCCGTG
GCGTGTGTTGCGCCCCCGCTGAGACAACGTACCTCCCGCCTCCGCGCCCA
ACGTCCGCGTCGCCGTTCTGCGCCGCCGCCATGGCCGACGTGGAGGACGG
CGAGGAACCCTGCGTCCTTTCTTCGCACTCCGGGAGCGCAGGCTCCAAGT
CGGGAGGCGACAAGATGTTCTCTCTCATGAAGTGGAACGCGGTATTCATG
TGGAGCTGGGACGTTGAGTGCGATACTTGTGTCTTCTGCTGGTTCCAGGC
GATGGTTTAGCGATTGCAGCGAATCCGGGACCGCGAGCTTGGTCGAGCCA
ACCAATTGTTGAGCCGGTTTTGTCCCCGCTTTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_e08.g1 MSMg01no303_e08.g1 CHROMAT_FILE:
MSMg01no303_e08.g1 PHD_FILE: MSMg01no303_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:08 2005
         (235 letters)



>mm_chr9_96378926_96379560
          Length = 635

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctactcttgatagttttacatttgggagaaaggagacaaatgaagacagggacgatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cctactcttgatagttttacatttgggagaaaggagacaaatgaagacagggacgatgtg 376

                                                                       
Query: 61  atttctgagactcccccgagtttaatacaatgtaactccagacaatgctcgcttactgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atttctgagactcccccgagtttaatacaatgtaactccagacaatgctcgcttactgac 316

                                                                       
Query: 121 ccgggcctgccctacagcaactggcctttggccactttagcaagcgctgggattctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 315 ccgggcctgccctacagcaactggcctttggccactttagcaagcgctggggttctctgt 256

                                                                  
Query: 181 gcaggccttgcccagcccctcgtgacgtcactggctcgcgccatccaatcatcgc 235
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 255 acaggccttgcccagcccctcgtgacgtcactggcgcgcgccatccaatcatcgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)