Query= MSMg01no304_c06.b1 MSMg01no304_c06.b1 CHROMAT_FILE:
MSMg01no304_c06.b1 PHD_FILE: MSMg01no304_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:22 2005
(724 letters)
>mm_chr9_72949075_72950203
Length = 1129
Score = 924 bits (478), Expect = 0.0
Identities = 507/520 (97%), Gaps = 9/520 (1%)
Strand = Plus / Minus
Query: 1 gccagcactacacagagaaactgtctccaaatactgtcgtcccccctcccccccaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gccagcactacacagagaaactgtctccaaatactgtcgtcccccctcccccccaaaaaa 459
Query: 61 tgacatgctccggtatgctgggcttccaatttcttttactttctagagacagctgggcaa 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgacatgctccggtatgctgagcttccaatttcttttactttctagagacagctgggcaa 399
Query: 121 aaagaaagcacatttaatgacggtaactccgcacacgtggcttcctaactagagggaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaagaaagcacatttaatgacggtaactccgcacacgtggcttcctaactagagggaagg 339
Query: 181 tcacatttgtgatggctcttttctctaaa-aacaggatatttcaatttagtttcctattc 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 338 tcacatttgtgatggctcttttctctaaacaacaggatatttcaatttagtttcctattc 279
Query: 240 atgttattt----gttcgttgtaatgtaagacaatcaaattacaaattacagaggatgtc 295
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 278 atgttatttgttcgttcgttgtaatataagacaatcaaattacaaattacagaggatgtc 219
Query: 296 tttattctaagtcttctgggggctgaaaagatgactcctcagttaagagcactggctgct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 218 tttattctaagtcttctgggggctgaaaagatgactcctcagttaagagcactagctgct 159
Query: 356 cgtcctagaggtcctgagttcaattcccagcaaccacatacatggtggctcgcaaccatc 415
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cttcctagaggtcctgagttcaattcccagcaaccacatacatggtggctcgcaaccatc 99
Query: 416 tgtaatgggatctgatgccctcttctggtgtgtctgaagtcaactacagtgtactcatat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 tgtaatgggatctgatgccctcttctggtgtgtctgaagtcaactacagtgtactcatat 39
Query: 476 acataaaataaattt--aaaaaacaagtctgttgttaggt 513
||||||||||||||| |||||| |||||||||||||||
Sbjct: 38 acataaaataaatttttaaaaaa--agtctgttgttaggt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1129
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1119
Effective search space: 798966
Effective search space used: 798966
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_c06.g1 MSMg01no304_c06.g1 CHROMAT_FILE:
MSMg01no304_c06.g1 PHD_FILE: MSMg01no304_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:23 2005
(607 letters)
>mm_chr9_72778596_72779602
Length = 1007
Score = 1135 bits (587), Expect = 0.0
Identities = 602/607 (99%)
Strand = Plus / Plus
Query: 1 cttaatcttgaggggaaatcacaaaagaactgaggaagagaaacaaattcagagatgagg 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 cttaatcttgaggggaaatcacaaaagaattgaggaagagaaacaaattcagagatgagg 260
Query: 61 aattatgaataaccagagttagcagtaacataaggggcagggtgacatttacagaagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattatgaataaccagagttagcagtaacataaggggcagggtgacatttacagaagtga 320
Query: 121 cagagaagtcctataatgtactaacaggaggcgttaccaataggcaatatttagtaaatg 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 cagagaagtcctataatgtactaacaggaggtgttaccaataggcaatatttagtaaatg 380
Query: 181 ccccactgggatggatgaatggagggttaggattgagagtggagaaatatggcagaaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccactgggatggatgaatggagggttaggattgagagtggagaaatatggcagaaatt 440
Query: 241 ggcagaagagctagtggaaggacgggagggaacagtttccatgtttaacattggactgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagaagagctagtggaaggacgggagggaacagtttccatgtttaacattggactgtg 500
Query: 301 tgtgactcagtacatcagcagcaggtgtctgagtctggctgtaagcctattgttcaactc 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgactcagtacatcagcagcaggcgtctgagtctggctgtaagcctattgttcaactc 560
Query: 361 cacccacacccccagggttttccagtgtatgcagagagtatacctgacatggcttgtaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacccacacccccagggttttccagtgtatgcagagagtatacctgacatggcttgtaac 620
Query: 421 tgaagcgagtcgcttatgtcagaaacagagacctggaagtcgtaggtaaacaggtgaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaagcgagtcgcttatgtcagaaacagagacctggaagtcgtaggtaaacaggtgaata 680
Query: 481 ctaattaacatcttgggaacacaccagcgtacccgagagaacgaagagccttgaggtttc 540
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 681 ctaattaacatcttgggaacacacaagcgtacccgagagaatgaagagccttgaggtttc 740
Query: 541 aaacgttgaaaaatactaacatttgggagacagatggagaagactgaagcagagcaagag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaacgttgaaaaatactaacatttgggagacagatggagaagactgaagcagagcaagag 800
Query: 601 agctgtc 607
|||||||
Sbjct: 801 agctgtc 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
