Query= MSMg01no304_e05.b1 MSMg01no304_e05.b1 CHROMAT_FILE:
MSMg01no304_e05.b1 PHD_FILE: MSMg01no304_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:40 2005
(570 letters)
>mm_chr9_60552223_60553192
Length = 970
Score = 1044 bits (540), Expect = 0.0
Identities = 567/586 (96%), Gaps = 16/586 (2%)
Strand = Plus / Plus
Query: 1 catgtccagagcttccctttaattccagggccttccatctctgggcctgacatggctact 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 catgtccagagcttccctttaattccaggggcttccatctctgggcctgacatggctact 260
Query: 61 ctagccaataggtcaggggaaatgttttgggaaacacatccacattgctagggaggggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagccaataggtcaggggaaatgttttgggaaacacatccacattgctagggaggggtg 320
Query: 121 gcaaacaatacattttattgaccagaacttagtcaggtggttatgccaagatacaaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaacaatacattttattgaccagaacttagtcaggtggttatgccaagatacaaagca 380
Query: 181 gtcgaaggaatataattgctaattagttggtcatgtagccatctaaaactggatcaggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcgaaggaatataattgctaattagttggtcatgtagccatctaaaactggatcaggta 440
Query: 241 taatcaaataaaggagactggatagtgattgacagttcgcattagaactgctgagactaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 taatcaaataaaggagactggatagtgattgacagttcgcattagaactgccgagactaa 500
Query: 301 tggctttgagggcccagccctaatggatatctacaccaaccccctcagggctcagggaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggctttgagggcccagccctaatggatatctacaccaaccccctcagggctcagggaac 560
Query: 361 atcttggaggagacagtgaaaaggatacaaaagccagagactgggtcagaggactgtgga 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 atcttggaggagacagtgaaaaggatacaaaagccagagactggggcagaggactgtgga 620
Query: 421 ttgctggggaagagggtcttttgggcatgctatacagtcatgaacccctggcagctatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgctggggaagagggtcttttgggcatgctatacagtcatgaacccctggcagctatgg 680
Query: 481 ctaccttcacaacacccacacaaaggtcaggccaata----------------cagcagg 524
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 ctaccttcacaacacccacacaaaggtcaggccaatagaatcagtcaacattccagcagg 740
Query: 525 cagcacagcactaactggactcagtgtgtgtgtgtgtgtgtgtgtg 570
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagcacagcactaactggactcagtgtgtgtgtgtgtgtgtgtgtg 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_e05.g1 MSMg01no304_e05.g1 CHROMAT_FILE:
MSMg01no304_e05.g1 PHD_FILE: MSMg01no304_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:40 2005
(768 letters)
>mm_chr9_60726627_60727793
Length = 1167
Score = 893 bits (462), Expect = 0.0
Identities = 471/474 (99%), Gaps = 1/474 (0%)
Strand = Plus / Minus
Query: 1 tgcctggactacatgagaccagtctcaaaaacccatgacacagtaaaaaaaaagccagct 60
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 473 tgcctggactacatgagaccagtctcaaaaacccaagacacagt-aaaaaaaagccagct 415
Query: 61 caatatttgaattttcaaaggactacaacattttgcttattagaaataactatttacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caatatttgaattttcaaaggactacaacattttgcttattagaaataactatttacact 355
Query: 121 tccacctgactgggtataaaagacacattttccaaacacttccaaactattggcaatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tccacctgactgggtataaaagacacattttccaaacacttccaaactattggcaatgaa 295
Query: 181 aggtacctcttctatactggcatctctcctgttgcaaagttgagtgtgtaaatcatttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aggtacctcttctatactggcatctctcctgttgcaaagttgagtgtgtaaatcatttat 235
Query: 241 attttaaaagaaaacacttaaaagttttaaagtagggtctggagagatggctcagtgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 attttaaaagaaaacacttaaaagttttaaagtagggtctggagagatggctcagtgtgt 175
Query: 301 aagagtggttgctctgcaaataagaggccctgggtttgaattccaagcacccacataaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aagagtggttgctctgcaaataagaggccctgggtttgaattccaagcacccacataaaa 115
Query: 361 accctgggaaaagctgtaagagcctataatcctagcattgcagagtagaggcgggtggat 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 114 accctgggaaaagctgtaagagcctataaccctagcattgcagagtagaggcgggtggat 55
Query: 421 caagagctctctggttgaccagcctcgctgaactgtgagattcaggctagtgac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 caagagctctctggttgaccagcctcgctgaactgtgagattcaggctagtgac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1167
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1157
Effective search space: 877006
Effective search space used: 877006
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
