BAC Information

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BAC

Clone NameMSMg01-304N21
Chromosome9 (Build37)
Map Location 25,798,188 - 25,798,838
singlet/doubletsinglet
Overlap genenone
Upstream geneHerpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304N21.T7 (MSMg01no304_n21.b1)MSMg01-304N21.TJ (MSMg01no304_n21.g1)
ACCAG430017AG430018
length1,2841,285
length of high quality
(start - end)
651 (135 - 785)760 (93 - 852)
definitionCHROMAT_FILE: MSMg01no304_n21.b1 PHD_FILE: MSMg01no304_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:04 2005CHROMAT_FILE: MSMg01no304_n21.g1 PHD_FILE: MSMg01no304_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCACAGCCNNNNNNAATCAGTGGGCGCTAXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTCACCTGAGGAATACCGCAATAAAGGACAAGCA
CCTGAAAAAATGTTCAACATCCTTACCCTTAAAGGAAATGAAAATCAAAA
CAATCCTGAGCTTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCTAGGATGTGGAGAAAAAGGAACACTCCT
CCATTGTTGGTGGGATTGCAAGTTTGGGCCCTCACTCTTTTCTCAGCTCC
TCCGCAGCATCCAGTGGCATCTGCAGTGCCCAAGAACCTGAGAACCTGTC
ACCCTCCACCTCTGTGGGACCCTAAGCCAACTCCAGGAATTCTGTGGGGA
CCCCAGATTGTGCCTTCCTGACTCTCAGAGTGGGGTCCTGCAGCTTCTCA
TAGCTCAACAGCTGCCTGGAAGCAGCATGGGGTCCACAGCTCAGTCAGAC
TTCCAACTTCCACATTCTGCCTTGCCCAGTGTCCTGAGCCCTGGGCTTGA
CACAGGACCCCACTTTTAACCCACGGGTAGAAAAGGGTCCAGTAGGTAGA
AAAGGCTTCTGTAAACAGAGGTAATCATGGGGAAGGGTTCATACTCAGAC
TGGTGTGAAAGTAGGTTCATGATCAGAAGTCAAGTCAGGGCTTACTTTAT
GTTCTCTCCCCACAGTTTACCATTTATTGTATAGAGAACTCAATAACGTT
TGCTTTTCCTTTCCTCTCCCTCAGATACTCTAGTGGTCTCTTAGCCAAAC
AGTTTATATGACTGCTCTTTNCAGGGATGCTGTGTGCCAGTTTTGTTGGG
ACCGAGTTATTAAAAATAAAGCTATTTAGATTTTTCTTTTTACTCCCAGT
GAATACTCTGTCTTAAACAGCATCCCCAAAGCAATAACATGCAGGAGCTT
AAAATACTTCTATACTCCCAAGAAATGTGCTTCTGGCTTATTCCCCAAAA
CCCCTATGAATTGGGGCATAAAAAAAATAACTCTTCCCCTTCTAAAATTA
AATTTGGTAATAATAAAATCCCCCAAACCGGGGAAAATAAGAACCCAAAA
AAGGAAACCCGGGGAGCTCCCAAAAAACCTGTCTCGGAAAAAATCAAAAC
CGGGATTTTTCTTTAAAAAACAGAGGGCTTAAAATATGTGGAAAAAAAAA
TTCCATTTCTTTGTAAGGGGGAACAAGGCCTGCTTTTTATCGAAAAAAAA
AAAAAAAAAGAGTTCAACCCCAAAATACGCCCAA
NNCCCTTTTTTTTNNNNACCGATGTGAGGCTGGGGCGCCXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTAGTTTAGCTCTGTAC
CCCATTTTTGATGGGGTTATCTTAATTTCTGGAGTCTAGCTTCTTGAGCT
CCTTGTATATATTGGATATTAGTCCCCTATGAGATTTAGGATTGTTAAAA
ATCCTTACCCAATCTGTTTGTAGCCTTTTTGTCTTACTGACAGTGTCTTT
TGCCTTACAGAAGCTTGGCAATTTTATGAGGTCCCATTTGTCAATTCTTG
ATCTTACAGCACAAGCCACTGCTGTTCTATTTAGGAATATTTCCAAGGTG
CCCATATCTTGGAGGCTCTTCCCCACTTTCTCCTTTATTAATTTCACTGT
CTCTGGTTTTATGTGGAGGCCTTTGATCCACTTAGACTTGAGCTTTGTAC
AAGGAGATAAGAATGGATCAATTCACATTCTTCTACATGATAGCCATCAG
TTGTGCCAACACCACTTGTTGAAAATGCTGTCATTTTTTTCACTGGATAG
TTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGAGTGTGGATTCATT
TCCGTGTCTTCAATTATGTTCCATTGATCTACCTATCTGTCACTCTATCA
GTACTATGCATTTTTTTTTATCACAATTGCTCTGAGGTACAGCTTAATGT
CAGGCATGGTGATTCCACAGAGGTTCTTTTATTGTTGAGAATAGCTTTTG
TTATTCTAGGTTTTTTATTATTCCAGATGAATTTTCAAATTGCCCTTTAT
TTTTTTTTTCATGTTCTTTTTTTTAAATTAGTTATTTTCCTCATTTACAT
TTTCAATGCTATCCCAAAAGTCCCCTATACCCTCCCCCCACTCCCCTAAT
CACCCACTCCTAATTTTTTGGCCCTGGTTCTCCCCGGTACTGGGGGATAA
AGAAATTGGAAGGCCAATGGGCCTCTCTTTTCCTTGAAGGGGCACTAGGC
CCTCTTTTTTTTAATTATCGCGCTTAAAATCAAAAAATTTCGGGGACCTG
GGGGGTTAAAAAGGGGGTTCCCCCTCTAGGTGGGGGAAACCTTTTATTTT
CTTGGGGAAAATCTCCTATTTCCCCCTGGGGGGGGTGGGATTTTCCAAAT
ATGATTGGGGGACTCCCTTCTTCTTTTTTTATGCCCCACCCAANCCCCCC
AAGAACAAAAAAAAGAGGCCTTTTCAAAACATTTTTTTATTTAATGGTAT
CTTGTTTTTGGGGTTATATGTCGTAACCCCTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_n21.b1 MSMg01no304_n21.b1 CHROMAT_FILE:
MSMg01no304_n21.b1 PHD_FILE: MSMg01no304_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:04 2005
         (651 letters)



>mm_chr9_25797988_25799038
          Length = 1051

 Score = 1154 bits (597), Expect = 0.0
 Identities = 638/653 (97%), Gaps = 4/653 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaatgaaaatcaaaacaatcctgagcttccatctcacaccagtcagaatggctaagatc 60
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 201 gaaatgaaaatcaaaacaatcctgagattccatctcacaccagtcaaaatggctaagatc 260

                                                                       
Query: 61  aaaaattcaggtgacagcagatgctggctaggatgtggagaaaaaggaacactcctccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaattcaggtgacagcagatgctggctaggatgtggagaaaaaggaacactcctccat 320

                                                                       
Query: 121 tgttggtgggattgcaagtttgggccctcactcttttctcagctcctccgcagcatccag 180
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tgttggtgggattgcaagtttgtgccctcactcttttctcagctcctccacagcatccag 380

                                                                       
Query: 181 tggcatctgcagtgcccaagaacctgagaacctgtcaccctccacctctgtgggacccta 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tggcatctgcagtgcccaagaacctgagaacctgtcatcctccacctctgtgggacccta 440

                                                                       
Query: 241 agccaactccaggaattctgtggggaccccagattgtgccttcctgactctcagagtggg 300
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 agccaactccaggagttctgtggggaccccagattgtgccttcctgactcccagagtggg 500

                                                                       
Query: 301 gtcctgcagcttctcatagctcaacagctgcctggaagcagcatggggtccacagctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcctgcagcttctcatagctcaacagctgcctggaagcagcatggggtccacagctcag 560

                                                                       
Query: 361 tcagacttccaacttccacattctgccttgcccagtgtcctgagccctgggcttgacaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagacttccaacttccacattctgccttgcccagtgtcctgagccctgggcttgacaca 620

                                                                       
Query: 421 ggaccccacttttaacccacgggtagaaaagggtccagtaggtagaaaaggcttctgtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaccccacttttaacccacgggtagaaaagggtccagtaggtagaaaaggcttctgtaa 680

                                                                       
Query: 481 acagaggtaatcatggggaagggttcatactcaga--ctggtgtgaaagtaggttcatga 538
           ||||||||||||||| |||||||||||||||  ||  ||||||||||||||||| |||||
Sbjct: 681 acagaggtaatcatgaggaagggttcatact--gaagctggtgtgaaagtaggtccatga 738

                                                                       
Query: 539 tcagaagtcaagtcagggcttactttatgttctctccccacagtttaccatttattgtat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tcagaagtcaagtcagggcttactttatgttctctccccacagtttaccatttattgtat 798

                                                                
Query: 599 agagaactcaataacgtttgcttttcctttcctctccctcagatactctagtg 651
           ||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 799 agagaactcaataacgtttgcctttcctttcttctccctcagatactctagtg 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)