BAC Information

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BAC

Clone NameMSMg01-305D04
Chromosome9 (Build37)
Map Location 19,808,029 - 19,808,633
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1
Downstream geneOlfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305D04.T7 (MSMg01no305_d04.b1)MSMg01-305D04.TJ (MSMg01no305_d04.g1)
ACCAG430247AG430248
length1,3271,292
length of high quality
(start - end)		382 (511 - 892)800 (90 - 889)
definitionCHROMAT_FILE: MSMg01no305_d04.b1 PHD_FILE: MSMg01no305_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:49 2005CHROMAT_FILE: MSMg01no305_d04.g1 PHD_FILE: MSMg01no305_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGTATNNNNNNGCGCAGTGGNCGCTAAGACTCCTATGGGAGAGGATC
CGCGGAATTCACTCTCGCACCTGCGTACAGTGCTTGTTTACAGTTAGGCA
CAGCGGAGGCCAGCGCCCTCTTATAATGGCGATTGTTCGCGGCACACACG
GCTCTCCTCAGAGATTACTGGCAGCAGGCACAAAATTGCTCACAGCACGT
ACCGGCTCTCCACATCTCCCCCTTTTTTATTTTATTAAAATTTGAGGCTG
GTCTAGGCCTGTGTAATTATGCCCATCAGCTGTGGCTCCTGTCTTAGGTC
GTTCCTCCAATGTCACAGCCTTTCCTGTCATAGGGTAACCCTATCGCCAC
CGGCCCCGTGTCTTAGGTTGATCTGTGCATGAGGAAAGTTGCCTGTCCCT
GGATACCGCTTTGCTATGTGACATTAACTACTAAATGACCTAGGGCGAAC
TCTATAAAACATTTTTTCCACCCCCGCCAATTAATTTTTGAGCATAGATA
GACAGATTTCAGAGGAGGCCCCTTGCTCGATGGCAGCAAGTGCTTGAGTT
ATCACAACCTTGTCACGTGTTTGTTGGGTTCTGAGCTTGCAAACCAACCA
GAGCATGACCACAAGTCCACAGCAGGTGGCAACGCCAAATAAACCTACCC
CCACCCATTCCTTAAAATAAGAAAAGGCAGATGAAATCCAGGAGGAGAGG
CCCTCTGTCAATGACAGGTCCACTCGTGTCGAGTTGATCTTTAGAACGGC
CGCTCTCAGGGCCTCAAGGGTCTCATCGAATCTTTCAGACCAGTTTCCTG
CAATATATAAAGAAAGCTGTCTAGACAGATTAGCTGCATAAGTAAATTTT
TCATATTGGACACTGGTAATGCACAGAGCTTCCAGTTTTCTTTCACAACC
CAACTGGGCCATCTGGTATAGAACACCTATCTGTTCCTCCGCCAGTCAAG
GGACTGATTCAAAACATCACCCTCCCTTTTACTTGGTACTAACAAAAGTT
GGACGGGATGGGATCACCCAGAACTGCGAAAGCTGAATTATTTTTTGCCG
GGTTGAACGGACCACCCTAACAACCCCGCCGTTTAAAAAAACTGCCTTGT
GTAAATTTTTTTATCCGCGCACCCAAGCCCAAATCCCTTTTCTTAATAAA
AAAAAAGAAGGGGTGTTTCCGCAAAGTACAACCGGAACCTCCCCCCTCCC
CCGGTCTTGTTTTCCCCCTTTAAACCCCCAAACTGGAAACCCATGATCTT
TCATAACCAAGGGAAACACCGAAAGGAAAGGATTANTTATACAGATCCCT
GATAGAAATCGAACTCCTCTTCTGCAG

NCCAAGTCTTNNNNNNATCGCATGGAGNCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAGAAAAAAAAAAGT
CTGTCAAACAAAACATCACAGGCCATGATGAATTCATTACAGAATTCTAC
CCCCTCTTCAAAGAAGAATTAGCATTAATACTTCTCAAATTATTTCACAA
AATTGAAACTTAACAAACATTTGCTAATTTGTTTTATGAGGCCACTACTA
ACTGGATGAAAAAAGCTACAGAAATACTCAATGAAAAATAAATTTATAGG
CCAATATCTCTTATAAAACATAGCTTCAAAGATTCTCAAATAAAATACAT
CTCTCCAAACCCTTTTGGCTTTTAAAGATTGTATTAACAACCAGTTCTTA
TTCTCATGGACCTGCCTTTGTATCTTGCTTAGTATTAATCTTCTATAAAT
GTTAATACAATTTCTATACTCTATATCTTCAGCATATTAGCTGTGCTATG
ATATAATGAGTATCATTTCTTGGCTATTATTGTGTTTGCTTCTTATACAT
GTACAAACATCTCTGTGCTTAAATTTTTTACGAGTTTATTGAAAATAAAT
TTTTATTTTCCTGGTACGCCAAATAGGTTTATATCCAAGTCATTTTTAAC
AACATTAATTTGAATGATGATCCAATTTGTTTACCATGTTTTCAAGTGTG
ATAATTCGTCTTCTAATTTATCTATTCTATTAGTAAAGATTTTCACTGAA
AAAAAGAAATATTTATAAACTAAATAAAAGAACATCAAATTAAGGTGGGG
GAAGGGTATAGGGGACTTTTGGGATAGCATTTGAAATGTAAGTGAAGAAA
ATATCTAATAAAAATAGAAAAAAATAAATTATGAAAAAGAATATTCATCA
TTATCATGTAGGCTTCATCTCAGGTATGCGATAATGGTACCACATACTTA
AATTATATTAGNATAATTCATCTCCCTAAACCTAAATGGGGAATCTCCTA
ATTATTTTGGTTAAAGGCCAAAGGGACTTTGCCAAATTTAAAATCCTTTC
TTGGAAAAAACCTGGAGAAACAAAAGAAAGGGGGCCATTCTTCTTTTTAT
TAAAGGGGATCTCGAGAAAGCCCCCGCCCCTTTAACCTTAACGGGGGGAA
ATCCTTAGACTCTCCAAAGCCGGAGAAGGAAAAGAAAAATATTTTTTTTC
TTCTTTTCCTGGTACCCCATAGAACTTCAACTTTTTTAAATTTAGAAAAT
GAAGAAAAGAGGGGAAAAAACTCACAAAAAGGCTCACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_d04.g1 MSMg01no305_d04.g1 CHROMAT_FILE:
MSMg01no305_d04.g1 PHD_FILE: MSMg01no305_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:49 2005
         (800 letters)



>mm_chr9_19807434_19808633
          Length = 1200

 Score = 1058 bits (547), Expect = 0.0
 Identities = 593/613 (96%), Gaps = 9/613 (1%)
 Strand = Plus / Minus

                                                                        
Query: 189  tcaatgaaaaataaatttataggccaatatctcttataaaacatagcttcaaagattctc 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 tcaatgaaaaataaatttataggccaatatctcttataaaacatagcttcaaagattctc 1141

                                                                        
Query: 249  aaataaaatacatctctccaaacccttttggcttttaaagattgtattaacaaccagttc 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 aaataaaatacatctctccaaacccttttggcttttaaagattgtattaacaaccagttc 1081

                                                                        
Query: 309  ttattctcatggacctgcctttgtatcttgcttagtattaatcttctataaatgttaata 368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 ttattctcatggacctgcctttgtatcttgcttagtattaatcttctataaatgttaata 1021

                                                                        
Query: 369  caatttctatactctatatcttcagcatattagctgtgctatgatataatgagtatcatt 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 caatttctatactctatatcttcagcatattagctgtgctatgatataatgagtatcatt 961

                                                                        
Query: 429  tcttggctattattgtgtttgcttcttatacatgtacaaacatctctgtgcttaaatttt 488
            |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 960  tcttggctattattgtgtttgcttcttatacatgtataaacatctctgtccttaaatttt 901

                                                                        
Query: 489  ttacgagtttattgaaaataaatttttattttcctggtacgccaaataggtttatatcca 548
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 900  ttacgagtttattgaaaataagtttttattttcctggtacgccaaataggtttatatcca 841

                                                                        
Query: 549  agtcatttttaacaacattaatttgaatgatgatccaatttgtttaccatgttttcaagt 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  agtcatttttaacaacattaatttgaatgatgatccaatttgtttaccatgttttcaagt 781

                                                                        
Query: 609  gtgataattcgtcttctaatttatctattctattagtaaagattttcactgaaaaaaaga 668
             |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 780  atgataatttgtcttctattttatctattctattagtaaagattttcactgaaaaaaaga 721

                                                                        
Query: 669  aatatttataaactaaataaaagaacatcaaattaaggtgggggaagggtataggggact 728
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 720  aatatttataaactaaattaaagaacatcaaattaaggtgggggaagggtatagggaact 661

                                                                        
Query: 729  tttgggatagcatttgaaatgtaagtgaagaaaa-tatctaataaaaatagaaaaaaata 787
            || ||||||||||||||||||||| |||| |||| |||||||||||||        ||||
Sbjct: 660  ttcgggatagcatttgaaatgtaaatgaaaaaaaatatctaataaaaa--------aata 609

                         
Query: 788  aattatgaaaaag 800
            |||||||||||||
Sbjct: 608  aattatgaaaaag 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 800
Length of database: 1200
Length adjustment: 10
Effective length of query: 790
Effective length of database: 1190
Effective search space:   940100
Effective search space used:   940100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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