Query= MSMg01no305_n11.b1 MSMg01no305_n11.b1 CHROMAT_FILE:
MSMg01no305_n11.b1 PHD_FILE: MSMg01no305_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:16 2005
(409 letters)
>mm_chr9_63667421_63668229
Length = 809
Score = 687 bits (355), Expect = 0.0
Identities = 390/405 (96%), Gaps = 6/405 (1%)
Strand = Plus / Minus
Query: 5 gaattccatttcttcccctccacctagaagctccttgtcatccaaaggacccctttacca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaattccatttcttcccctccacctagaagctccttgtcatccaaaggacccctttacca 721
Query: 65 tcacttcttagaaaacctttcccttgccagcatacattgaggggttttatgttttgttag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tcacttcttagaaaacctttcccttgccagcatacattgaggggttttatgttttgttag 661
Query: 125 agacaaggtctcatgtagcccaggctggccagtagcttactacatagccaaaaatggtct 184
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 660 agacaaggtctcatgtagcccaggctggccagtagctcaccacatagccaaaaatggtct 601
Query: 185 tggactctgatcagcctatccctaccacccaagtgctcagatttcaggagtgtgctcatc 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 600 tggactctgatcagcctattcctaccacccaagtgctcagatttcaggagtgtgcccatc 541
Query: 245 tctccatcagagacttctataaaaaaaagtttgatttacatttactactgtgtgtatgtg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 540 tctccatcagagacttctataaaaaaaagtttgatttacatttactactgtgtgcatgtg 481
Query: 305 tatataatatatacagatatgggtgtgatatatatttatatgtgcgtatatgcatgtttt 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tatataatatatacagatatgggtgtgatatatatttatatgtgcgtatatgcatgt--- 424
Query: 365 tatgtgtgtgtgtgtgtgtgtgtgtgtatacatgagttcatgcca 409
|||| ||| ||||||||| | |||||||||||||||||||||
Sbjct: 423 ---gtgtatgtatgtgtgtgtatatgtatacatgagttcatgcca 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_n11.g1 MSMg01no305_n11.g1 CHROMAT_FILE:
MSMg01no305_n11.g1 PHD_FILE: MSMg01no305_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:17 2005
(328 letters)
>mm_chr9_63509310_63510037
Length = 728
Score = 623 bits (322), Expect = 0.0
Identities = 325/326 (99%)
Strand = Plus / Plus
Query: 1 agggctcagcctcacctggcccctgccctccccgccagctgatgaccgccatactgctga 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agggctcagcctcacctggcccctgccctccccaccagctgatgaccgccatactgctga 260
Query: 61 ctttcttggagcatacatgtcttctgtctgcatcccacccccctgcccccatctcattgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcttggagcatacatgtcttctgtctgcatcccacccccctgcccccatctcattgc 320
Query: 121 ctacataatggcttcttctcaggcatatacagccccctactcaatgcttgcttccttggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacataatggcttcttctcaggcatatacagccccctactcaatgcttgcttccttggc 380
Query: 181 accacaagtgaacacagatgtgagcgggctgtgaaggtctaagtattctcctccgcatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accacaagtgaacacagatgtgagcgggctgtgaaggtctaagtattctcctccgcatgg 440
Query: 241 ctctagacacggtacggattctcccctgacatctgtacactgtacagattgaggaaggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctagacacggtacggattctcccctgacatctgtacactgtacagattgaggaaggca 500
Query: 301 aaatacaaagccagcttctctggagg 326
||||||||||||||||||||||||||
Sbjct: 501 aaatacaaagccagcttctctggagg 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
