BAC Information

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BAC

Clone NameMSMg01-306A17
Chromosome9 (Build37)
Map Location 116,724,891 - 116,725,147
singlet/doubletsinglet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306A17.T7 (MSMg01no306_a17.b1)MSMg01-306A17.TJ (MSMg01no306_a17.g1)
ACCAG430822AG430823
length715763
length of high quality
(start - end)		650 (46 - 695)257 (433 - 689)
definitionCHROMAT_FILE: MSMg01no306_a17.b1 PHD_FILE: MSMg01no306_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:42 2005CHROMAT_FILE: MSMg01no306_a17.g1 PHD_FILE: MSMg01no306_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:42 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGAATTACCAAGGCCAGTGCTACAACCCCACCTTAAAGAAGCA
TTTTTTTAAATTGAGTTTCTTCCTCTGGAATGAGTCTAACTTCTGAGACG
TTGGCCAGTGCTACAACCCCACCTTAAAGAAGCATTTTTTTAAATTGAGT
TTCTTCCTCTGGAATGAGTCTAACTTCTGAGACATCTAGGAGCGCAGTCT
GCAGACACTCGGGCTGAGAGAACAGTCATGAAGCATGCCCAGTTCACAGT
TAGAGTGGTGGCTCACAGTTAGAGTGGTGGCTCGGTCTGTAAAGCGCCTG
GGCAGAACGCCTTTGTACCTATTTACAGGGTCTAGAATGAGATGTCACAC
ATAGTAAACCTTCATCAATGTGTGTGTGTGTGTGTGTGTGTGTATGTGTG
TGTGTGCATGTGAGTGTGTTTGGGCACACGTAGCCCAGAGCATAAACTCA
GATGCCATTCCTCGGATGCTGTCCATACTCCCACCTTCCCTTTGAGTCAG
GGTCACTTACTGACCACAACTCACCAAATAGGTTAGGCTGGCTGACCAGT
GAGCCCTAGGGATCTGCCTGTCTCTGTCTAGCTGGCACTGGGATTATAAT
CCCATCTAACTATGCCTGGCTTTTCATGTGGTGCTAGGAATCCAACCCAG
ATTGCCCTGCTTCCG

GGGGGGNGGGGAGGGNGGGGNCGGGCGCCCGNNNCCCCCNNCCNNCNNNN
NNCCGAAGATATGGGTAGGCCGGNGGNCGCCGGTTTTCGGAACNGANNNG
ANNNANNGAAGGTACCAAGAGAAGGGNGNANNNNGAAGGGNNNNNAGNNN
AANNNNAAANAAAANNTTTAAGCCCCANNNNGGAGAAANAGAGAAGAAAN
NNNAAAANNNAGGGAAGNANANAAGAANANAGAGAGNNAAANAGNNNGGA
GGGAAGAAAGNAAGGGGGNAGGNAANAGNNCNNNAGAGNNNAAGAAANAN
NATTTAGTNATAGTGANAGAAAGNAGGGNANAAAAGNAGATGTGGAGGTT
AANAAAGNAAAAGAGAATTTTTTATTTTGAGAANAGGNAAAGGNANNNAN
NCCNNNCNGGATATTTATACATCCCCTACACGAAACACAGCAAAAGGTAC
CAGGAAAAATGAATGTCTGTATGGAGAAGTAAGAGATTAGACTTGTGCCT
GTCACCATACATAAAAATCCATTCCCGAAATGGAGCAAAGACTTAATGTG
CAACCTGAAAAGCTGAAACTTGTAGACAGATCATTGGTGATGCTCTACAG
GATACAGACGTAGGAAAGGACTTTGCATTCACTCAGGAATCAAGGCAACA
CTGTTTAGCCAACTAGCTAGATCTCAGTCTTCCTAATGCTCAGACCCTGT
TTTTTTCTTCTTCATGTTGNNTCATTGGCACTTCATAACTAATTTTGCTA
CTGTTATGAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_a17.b1 MSMg01no306_a17.b1 CHROMAT_FILE:
MSMg01no306_a17.b1 PHD_FILE: MSMg01no306_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:42 2005
         (650 letters)



>mm_chr9_116724848_116725897
          Length = 1050

 Score =  373 bits (193), Expect = e-107
 Identities = 245/271 (90%), Gaps = 14/271 (5%)
 Strand = Plus / Minus

                                                                       
Query: 380 tgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgcatgtgagtgtgtttgggcacacgtagc 439
           ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||
Sbjct: 300 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcatgtgagtgtgtttgggcacatgtagc 241

                                                                       
Query: 440 ccagagcataaactcagatgccattcctcggatgctgtccatactcccaccttccctttg 499
           |||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 240 ccagagcataaattcagatgccattcctcagatgctgtccatcctcccaccttccctttg 181

                                                                       
Query: 500 agtcagggtcacttactgaccacaactcaccaaataggttaggctggctgaccagtgagc 559
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 180 agtcagggtcacttactgaccacaactcaccaagtaggttaggctggctgaccagggagc 121

                                                                       
Query: 560 cctagggatctgcctgtctctgtctagctggcactgggattataatcccatctaactatg 619
           ||| ||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct: 120 ccttgggatctgcctgtctctgtctagctggcactaggattataagcccatccaactatg 61

                                          
Query: 620 cctggcttttcatgtggtgctaggaatccaa 650
                         |||||||||||||||||
Sbjct: 60  --------------tggtgctaggaatccaa 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 2
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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