BAC Information

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BAC

Clone NameMSMg01-306C18
Chromosome9 (Build37)
Map Location 30,149,668 - 30,149,975
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt
Downstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306C18.T7 (MSMg01no306_c18.b1)MSMg01-306C18.TJ (MSMg01no306_c18.g1)
ACCAG430912AG430913
length758755
length of high quality
(start - end)
311 (444 - 754)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no306_c18.b1 PHD_FILE: MSMg01no306_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:52 2005CHROMAT_FILE: MSMg01no306_c18.g1 PHD_FILE: MSMg01no306_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTAGGATTTCCACTTTGACATAGTTCAACAGGTTTTGCTA
CCTTGAGCACACATAGAAAACCATATTTTCACAAAACCTGATTTGGAAAG
AAAGAGGGCATGATTCAGGGGCACTAAGGAAATATGTGATCGGTATTATA
TTGGATTTTGTGGAAAACAAGGTTAGGCAAATCCATTGAATACGGGTTGC
CAATGGCCTTGGAAATAACGTGGACAGGAATTTATACTAGGTATACTTTT
TGTAAACTACTTTTATCCACTGAAAGAAATTTTAGAAAATGTCATTATTA
AGGTGATAAAAATATGCAGTCTCTTTTATTGCACCACTCCGCTAGCATTT
TAGTGTATTTCCTAGCCTTGCACATGGCATGAACATCTATGAGTGCCTAG
ATTTTATAATAATATAATTAATCATTCCAAGCATATTATATAAACATTTT
ATAACTTGAAGTGGTTCTGGGAGAACTTTTATTTGAAGTATCCCCTAGAA
AATAAAGTTTCACATCAGCATAAAAGTTCACCCTCCATCCACTGTGATGT
ATTTACGAATTTCCTTCAGACACTACTGTCATCTAATTCCCATAATGGAT
TCTAATACTTGACACTTGTTTATTTTCCTATCACAAGCCATTGCCATTAA
TGTTCATAAAATCTGTAACTCTGAAAAGTTTCCAGTATTAGTTACTGATT
ANCAGTAA
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCTTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTT
ACAGAAGCTTTGCAGTTTTATGAGGTTCCATTTGTCAATTCTCGATCTTA
CAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATA
TCTTCGAGGCTTTTCTTTATTTTCTCCCNTCTAACCCCCAGTGTCTCTGG
TTTTATGTGGAGTTCCTCGATCTACTTAGATTAAGAACTTAGTACAAGGA
GAGAGGAATGGATCAATTCGCATTCTTCTACATGATAACCACCAGTTGTG
CCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAG
CTTCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGAAAAATATGGAACG
CTCCACGAATTTGCGTGTCATCCTTGCGCAGGGTCCAAGCTAATCTTCTC
TCTATCGTTCCAATATTAGTATATGTGCTACCGAAGCGGGCACACAATAA
CAGAATCTTAAATAGTAAAATGAAACACAATTTATCAAAGTTTTTGGATA
CAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_c18.b1 MSMg01no306_c18.b1 CHROMAT_FILE:
MSMg01no306_c18.b1 PHD_FILE: MSMg01no306_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:52 2005
         (311 letters)



>mm_chr9_30149439_30150149
          Length = 711

 Score =  572 bits (296), Expect = e-168
 Identities = 305/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctagattttataataatataattaatcattccaagcatattatataaacattttata 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tgcctaaattttataataatataattaatcattccaagcatattatataaacattttata 478

                                                                       
Query: 61  acttgaagtggttctgggagaacttttatttgaagtatcccctagaaaataaagtttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acttgaagtggttctgggagaacttttatttgaagtatcccctagaaaataaagtttcac 418

                                                                       
Query: 121 atcagcataaaagttcaccctccatccactgtgatgtatttacgaatttccttcagacac 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atcagcataagagttcaccctccatccactgtgatgtatttacgaatttccttcagacac 358

                                                                       
Query: 181 tactgtcatctaattcccataatggattctaatacttgacacttgtttattttcctatca 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 357 tactgtcatctaattcccataaaggattctaatacttgacacttgtttattttcctatca 298

                                                                       
Query: 241 caagccattgccattaatgttcataaaatctgtaactctgaaaagtttccagtattagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 caagccattgccattaatgttcataaaatctgtaactctgaaaagtttccagtattagtt 238

                   
Query: 301 actgatta 308
           ||||||||
Sbjct: 237 actgatta 230


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)