TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGCTGGATGTCAAAAGCCAAATTCTACAGTTTGTCCTCTGTCCT
TTGCAAGTGCATTCTTCCTATACAGGATGAATAAATATAATAGACATATA
AAAAGACAGCAGTAGGGATTGTCACTAAAATATTCTTTAAAAATATTTGA
ACAATACACTGGAAAATTATTTTATTTTAATGATTCAGTAAACATTCTAA
CAGGGTATAAAGTAAACACCCAATTTAGAGCACATTAAATATAAATATTG
AAGGCAATAAAATGGAAACAGAACAGAGCAAGTCAACCCAAACTTAACAA
GAATTGAACTTGTATCCTTCTATTTTTAGATGGGTAAAATACTTTTACTT
TGCACAAATTAATATTTTTGCATTGCAAATATGTAAAAGTGTAGTTCATT
TTCAGTGTTTCCAATTCATGGAAGTTCTAACACATAGTTGATTTTTTCAT
GGATATTTGATAATGCAAAGAATGACTAATTAAAAAAAGCTATATAATAT
ATCATGGCATATAAAAAAATGAAGCACAGAAAAGTACAGGATATAAGATG
CTTTGACAGAGCAGTAAAGCATTAAGTTTAAGAACAATGCTGAAGTTTGT
ACATAATAGAGTGTCTGTTACTGAATGCATTTCTTAAAAGTCTAAGTCCC
TTCAATCAGATGCCTTTAACTTACAGGTGAAGAAAGCCCCAAAGTTCTTT
G

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCAAA
AAACAAACAGAGGGATCTGGAATGGTGAGAAGCACCTAAAGATATGTTCT
TAGCCCTTAGTGATCAGAGAAATGCAAATCAAAACAACCTGAGATTCTAC
CTTACACCAATCACAATGGCTAAGATCAAAAACTCAGGTGACAACACATG
CTGGTGAGGATGTAGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATT
GTAAACTGGTACAACAACTCTGGAAATCAAGATGCCCCAGCATGCCACAG
GTTTTCATGNTCCACTATGTTCATAGCAGTCATCCTTCCTCTTGTTTGTA
TACCGAATCTACTTTGGGGTGTGTAGTCTGAAGAATGATACAACACTCTC
CCTCTTGCCTATCTCTTATGGGTCAAAGTATCTGAATTAATCATAAGAGA
CAAAGAGTGCAGTGGCAGAAGCCTTCATTTATCTCTAGGCATCATAACAA
TCCAAATGTTGCTCTTTAAGTTTGGAAGAAAAGCAAGTATAACTTTTATG
AAAATAAATAATATATAGTTATTCCTTTATGCTGTCTCTCTACACACAAA
TGCTCCTGACATTCAGGCACTCTATCTGCAGTGTGATCAGTGAACAATTC
TGTGGATTTGGTTCTAAGAAACTTAATTAGATTAATTATACTTCATTTTA
AAATCAGATAATTGGTTCG

Query= MSMg01no306_k03.b1 MSMg01no306_k03.b1 CHROMAT_FILE:
MSMg01no306_k03.b1 PHD_FILE: MSMg01no306_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:29 2005
         (657 letters)



>mm_chr9_84620738_84621793
          Length = 1056

 Score = 1154 bits (597), Expect = 0.0
 Identities = 639/653 (97%), Gaps = 1/653 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgctggatgtcaaaagccaaattctacagtttgtcctctgtcctttgcaagt 64
           ||||| |||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatttcatgcttgaagtaaaaagccaaattctacagtttgtcctctgtcctttgcaagt 264

                                                                       
Query: 65  gcattcttcctatacaggatgaataaatataatagacatataaaaagacagcagtaggga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcattcttcctatacaggatgaataaatataatagacatataaaaagacagcagtaggga 324

                                                                       
Query: 125 ttgtcactaaaatattctttaaaaatatttgaacaatacactggaaaattattttatttt 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatcactaaaatattctttaaaaatatttgaacaatacactggaaaattattttatttt 384

                                                                       
Query: 185 aatgattcagtaaacattctaacagggtataaagtaaacacccaatttagagcacattaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgattcagtaaacattctaacagggtataaagtaaacacccaatttagagcacattaa 444

                                                                       
Query: 245 atataaatattgaaggcaataaaatggaaacagaacagagcaagtcaacccaaacttaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atataaatattgaaggcaataaaatggaaacagaacagagcaagtcaacccaaacttaac 504

                                                                       
Query: 305 aagaattgaacttgtatccttctatttttagatgggtaaaatacttttactttgcacaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagaattgaacttgtatccttctatttttagatgggtaaaatacttttactttgcacaaa 564

                                                                       
Query: 365 ttaatatttttgcattgcaaatatgtaaaagtgtagttcattttcagtgtttccaattca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaatatttttgcattgcaaatatgtaaaagtgtagttcattttcagtgtttccaattca 624

                                                                       
Query: 425 tggaagttctaacacatagttgattttttcatggatatttgataatgcaaagaatgacta 484
           |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 tggaagttctaacacatagtcgattttt-catggatatttgataatgcaaagaatgacta 683

                                                                       
Query: 485 attaaaaaaagctatataatatatcatggcatataaaaaaatgaagcacagaaaagtaca 544
           ||||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 684 attaaaacaagctatagaatatatcatggcatatataaaaatggagcacagaaaagtaca 743

                                                                       
Query: 545 ggatataagatgctttgacagagcagtaaagcattaagtttaagaacaatgctgaagttt 604
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 744 ggatataagatgctttgacaaagcagtaaagcattaagtttaagaacaatgccgaagttt 803

                                                                
Query: 605 gtacataatagagtgtctgttactgaatgcatttcttaaaagtctaagtccct 657
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtacataatatagtgtctgttactgaatgcatttcttaaaagtctaagtccct 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1056
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1046
Effective search space:   676762
Effective search space used:   676762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)