BAC Information

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BAC

Clone NameMSMg01-306M09
Chromosome9 (Build37)
Map Location 53,340,981 - 53,341,680
singlet/doubletsinglet
Overlap geneAtm
Upstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik
Downstream geneNpat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306M09.T7 (MSMg01no306_m09.b1)MSMg01-306M09.TJ (MSMg01no306_m09.g1)
ACCAG431338AG431339
length733563
length of high quality
(start - end)
664 (45 - 708)88 (72 - 159)
definitionCHROMAT_FILE: MSMg01no306_m09.b1 PHD_FILE: MSMg01no306_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:39 2005CHROMAT_FILE: MSMg01no306_m09.g1 PHD_FILE: MSMg01no306_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGATTTTCCCACCTCATCTCCAGAGTGCTACCACCGCCCAGCTA
CTGTAACTTATGTTTAAAACAAATTTGAAACAGATTCTTATAGTAAAAAT
GAATAGAATCCTCATGATGGTTTTGCTCTATTTGAGACAGAGTTTCCCTA
TATAGACCAGATAGGACAAGAACTCACTATGAAAGCCAGACTGGCCTGGC
CTCCTGCCTCAGCCTCAAGAAAGCAGTATGACAGGAATCCTATGATGCCT
CTTGTTTTCTTAAAACAATTTAGTTATTATTTATTTACTTTATGTATATG
GGTACAGTATAACTGAACAGATGTTTGTGAGCCTTCATGAGGTCGGCCCC
ACTAGCTCATCCCTGCTAGGTCCGGCCCATAGATTTATTTATTTTATACA
TAAGTACACTGTAGCTGTCTTCAGACATGCCAGAAGAGGGTGTCAGATCT
CATTACAGGTAGTTGTGAGCCAGGACCTTAGGAAGAGCAGTCAGTGCTCT
TACCCTCCGAGCCATCTCGCCAGCACCCTAATGCATCTTTCTTGTTGTTA
CAGGATATACATCTAAAACATTCTATCAAAGAAATGACATAAACCTTCCA
GTGTTATGTATGTTTTTAAAACTTTCAGATAACCACTAAGGGTCAACTTC
CTATGTAACACATAATGATATACAGCAAACAAA
NCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATTTAATGTAAACTCTAAAACAAGAGA
TCTCATAAAAAGCAGAGACGAGAATGTTTTTTACCAAAGACCAGGAATAG
GAAGAAATGGAGGTGTTACAGACCAAAAGATCCAATCCTTTCATTAAACC
GGAAGGAATGAACAGGTAAATACCCATGGGATGGGGGAATTGGGGGAATA
AAGGGTGGAAATCCAGAAAATTCCCCATTTGGGGGCCCCAATTAAAAAGG
GGGACCCCCTTTTTTTCAATCCCCCCAAAAAAAAAACAAGGGGGGGACCC
TTTTGGGACAATATTTTTGGGGGGGTTCAAACATATTTTTTCCCCCCCTC
CTTTTTTGATACCTCCCCTTCTTTTTACCCCCTCCAAGAACTCTACCTCT
TTCCTCTAAATTTTTATCAACCCCCCTTCTTTCTCTCCTCCTCTTTTTTT
TTTTTTTTTACCTCCCTTTTTTTTTGGTGGGGGGTCCCCCCCTCTCTTTT
CTCCATTTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_m09.b1 MSMg01no306_m09.b1 CHROMAT_FILE:
MSMg01no306_m09.b1 PHD_FILE: MSMg01no306_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:39 2005
         (664 letters)



>mm_chr9_53340817_53341880
          Length = 1064

 Score = 1118 bits (578), Expect = 0.0
 Identities = 650/700 (92%), Gaps = 40/700 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagattttcccacctcatctccagagtgctaccaccgcccagctactgtaact 64
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 165 gaattcagagatttgcccacctcatctccagagtgctaccatcgcccagctactgtaact 224

                                                                       
Query: 65  tatgtttaaaacaaatttgaaacagattcttatagtaaaaatgaatagaatcctcatgat 124
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 225 tatgtttaaaacaaatttgaaacagattcttatagtaaaaatgaacagaatcctcatgtt 284

                                                                       
Query: 125 ggttttgctctatttgagacagagtttccctatatagaccagataggacaagaactcact 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtttttgctctatttgagacagagtttccctatatagaccagataggacaagaactcact 344

                                                                       
Query: 185 atgaaagccagactggcctggcctcctgcctcagcctcaagaaagcagtatgacaggaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atgaaagccagactggcctggcctcctgcctcagcctcaagaaagcagtatgacaggaat 404

                                                                       
Query: 245 cctatgatgcctcttgttttcttaaaacaatttagttattatttatttactttatgtata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cctatgatgcctcttgttttcttaaaacaatttagttattatttatttactttatgtata 464

                                                                       
Query: 305 tgggtacagtataactgaacagatgtttgtgagccttcatgaggt--------------- 349
           |||||||| |||||||||||||||| |||||||||||||||||||               
Sbjct: 465 tgggtacactataactgaacagatggttgtgagccttcatgaggttgttgggaattgaat 524

                                                                       
Query: 350 -------------------------cggccccactagctcatccctgctaggtccggccc 384
                                    |||||||||||||||||||||||||| ||||||||
Sbjct: 525 ttttagaacctctgctcactctggtcggccccactagctcatccctgctagctccggccc 584

                                                                       
Query: 385 atagatttatttattttatacataagtacactgtagctgtcttcagacatgccagaagag 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 atagatttatttattttatacataagtacactgtagctgtcttcagacatgccagaagag 644

                                                                       
Query: 445 ggtgtcagatctcattacaggtagttgtgagccaggaccttaggaagagcagtcagtgct 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ggtgtcagatctcattacaggtagttgtgagccaggaccttaggaagagcagtcagtgct 704

                                                                       
Query: 505 cttaccctccgagccatctcgccagcaccctaatgcatctttcttgttgttacaggatat 564
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 705 cttaccctccgagccatctcgccagcaccctgatgcatctttcttgttgttacaggatat 764

                                                                       
Query: 565 acatctaaaacattctatcaaagaaatgacataaaccttccagtgttatgtatgttttta 624
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 acatctaaaatattctatcaaagaaatgacataaaccttccagtgttatgtatgttttta 824

                                                   
Query: 625 aaactttcagataaccactaagggtcaacttcctatgtaa 664
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 aaactttcagataaccactaagggtcaacttcctatgtaa 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)