Query= MSMg01no307_c14.b1 MSMg01no307_c14.b1 CHROMAT_FILE:
MSMg01no307_c14.b1 PHD_FILE: MSMg01no307_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:08 2005
(624 letters)
>mm_chr9_105946166_105947189
Length = 1024
Score = 938 bits (485), Expect = 0.0
Identities = 497/505 (98%), Gaps = 8/505 (1%)
Strand = Plus / Minus
Query: 124 aaaggtccacagcatctcctcgcacccacacgctgggatcagatgcatcacgtagacttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 aaaggtccacagcatctcctcgcacccacacgctgggatcagatgcatcacgtagacttc 965
Query: 184 gagagacatgtgagacacagagcatagcatctgtttcctttgttccatccgttctcaacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 gagagacatgtgagacacagagcatagcatctgtttcctttgttccatccgttctcaacc 905
Query: 244 tgtggattgcaacccctttgggggttgaacagctttttctcaggggtcacctaagaccac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 tgtggattgcaacccctttgggggttgaacagctttttctcaggggtcacctaagaccac 845
Query: 304 ggagaaaatacagagatttaagatttacattcttaagctttg----ccccctaatttact 359
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 844 ggagaaaatacagagatttaagatttacattcttaagctttggttt----ctaatttact 789
Query: 360 atttctgactttactctgcgatttaacatgcccgtagaattttaaatccactcatttttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 atttctgactttactctgcgatttaacatgcccgtagaattttaaatccactcatttttt 729
Query: 420 ttttccagttcaagaagttctaattgattctcttaaaatgctatctgccttttcttcatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttttccagttcaagaagttctaattgattctcttaaaatgctatctgccttttcttcatt 669
Query: 480 gagaacactaagaatttctttttatttgtcatcttaacgtatgaaatctggtaactgaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gagaacactaagaatttctttttatttgtcatcttaacgtatgaaatctggtaactgaga 609
Query: 540 ttgtttttggtgtgagagttactcagggcccctgatctgtcctcttgccaagggtgctaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttgtttttggtgtgagagttactcagggcccctgatctgtcctcttgccaagggtgctaa 549
Query: 600 tgtacattctcactcttggctagaa 624
|||||||||||||||||||||||||
Sbjct: 548 tgtacattctcactcttggctagaa 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_c14.g1 MSMg01no307_c14.g1 CHROMAT_FILE:
MSMg01no307_c14.g1 PHD_FILE: MSMg01no307_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:08 2005
(623 letters)
>mm_chr9_105784164_105785186
Length = 1023
Score = 1197 bits (619), Expect = 0.0
Identities = 622/623 (99%)
Strand = Plus / Plus
Query: 1 tcaggaaagaaaggctcttctgcacaggtgtttggaaaacacttgtctaaaaatgcacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggaaagaaaggctcttctgcacaggtgtttggaaaacacttgtctaaaaatgcacag 260
Query: 61 agagatgatacatcatggaatcagcagcagcacaagacactgagagcttccaagaaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagatgatacatcatggaatcagcagcagcacaagacactgagagcttccaagaaataa 320
Query: 121 tgaacttatcaatgcttctatttcacacttaaaataacaagaaacggccaatgttccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaacttatcaatgcttctatttcacacttaaaataacaagaaacggccaatgttccagg 380
Query: 181 acaattgtggcaactagcaactaatgacaggggggtctctgttgaaaacagatttaggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaattgtggcaactagcaactaatgacaggggggtctctgttgaaaacagatttaggtg 440
Query: 241 gtgtgtgtctgaaattcacaatcatgcccaaactcgcatagaaagtattttcagtagttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtgtctgaaattcacaatcatgcccaaactcgcatagaaagtattttcagtagttt 500
Query: 301 agagactcttgatacaaactatagcactgttccaggagagacctcaccagtcaggtaatt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 agagactcttgatacaaactatagcactgttccaggagagacttcaccagtcaggtaatt 560
Query: 361 ttcaaaaccagttttcacattccacagaaactctataaacactaaagactggaatcctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaaaaccagttttcacattccacagaaactctataaacactaaagactggaatcctga 620
Query: 421 catagtgcaccttccaaaactggaaagttgaaaataaaacctaccgtcataaacagaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catagtgcaccttccaaaactggaaagttgaaaataaaacctaccgtcataaacagaaac 680
Query: 481 ctctctctaaagcccaatccaagagctcactgggaaagcatttagcctcctgcacagtca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctctctaaagcccaatccaagagctcactgggaaagcatttagcctcctgcacagtca 740
Query: 541 gctgttcccatcgatcttaccatagcaaagtgtgcagcgccgaagcttctccagtggctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctgttcccatcgatcttaccatagcaaagtgtgcagcgccgaagcttctccagtggctc 800
Query: 601 ataatctccaactggggggactg 623
|||||||||||||||||||||||
Sbjct: 801 ataatctccaactggggggactg 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
