BAC Information

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BAC

Clone NameMSMg01-307K17
Chromosome9 (Build37)
Map Location 98,546,358 - 98,728,713
singlet/doubletdoublet
Overlap genenone
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22
Downstream geneEG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307K17.T7 (MSMg01no307_k17.b1)MSMg01-307K17.TJ (MSMg01no307_k17.g1)
ACCAG431963AG431964
length724732
length of high quality
(start - end)
371 (43 - 413)281 (433 - 713)
definitionCHROMAT_FILE: MSMg01no307_k17.b1 PHD_FILE: MSMg01no307_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:47 2005CHROMAT_FILE: MSMg01no307_k17.g1 PHD_FILE: MSMg01no307_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,728,345 - 98,728,713)(98,546,358 - 98,546,638)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAATT
CTTCTCTCCTCCACACTCTTTGTAAGCATCAGCCTTTATAACTCCAGCTT
TGAGGACCCTAGGTTCCCTAGACAACACTTGGCCTGGCCAAAATGTGGCA
GTCTCCGGTTCCATTTAGCTTGGCTGGGGTAATGTTTATATTTTTCCCTT
AAAGGCCATTTATAGGACAAAACTAACAATAAACACTCTCATTAACATTA
AAAAAAAGAAATCTCAAAACTTTGCAACAAGAGTTTCCAGAATGTGATTT
TTTTTTCCCCTTCACAAAATTATACTCTGATTAGCATCTATTGACTTCAT
GTTCCTGGCTGTTACTTGGTTCATGGACGAATCCCAAAGGTTCTCGCCCT
TGGGAATCCCCAGACCCCCCGCGAGGCCTCTCTGAGCAGTCTGAGGCCTT
CCTTTTCTGAGTCAGGCCAACAGTTGTCTTTGCTTTCTCACTGGGGCCCT
CAGCCAGAGGTATGCAGAGCCCTGGGATACGTATAGGTAGGCCCAAGAGA
TTGCTTTGGGTTCCTGAGAAGGCTCCCTAGTGAGATGGGTCACCATGTTG
GGAGACATAGGGAACTCATTTACCTAGAGCCCAGCGGAAAGTAGAGACAG
GAACTACTGGAACAGTAGAAAAGCCACCCTCCATCATGCTAACTACAGAG
ACCACCTGTCCCAGTTTGCCAAGA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGGCCTAGGGAGCTGCCACCT
CCAGGTGACAACTGGCTCTATTTCCCAATAAAAAGGAAACTTCACCAATG
AGAGGCAGACTTGCCTTCTATTTCTGGTGACTTTAGAAAACCCTGAGATA
TTTAAATGGTTCTGTCATTTCAGAAAAATTCCACCCTGCTTCCAGAGTCA
GGCCAAGCTTGCCAAGATCCTGCCCAAACAGTCAGACATCTCAGCCGTAC
ATGGCTGCCAGCGTGGGTGCAGATGGTAGACCGTAGCTCACCACTTTCTA
CTGAACCTCAGACACAGAGGCCCCGCAGCCAGACCCCACCAGGCTCCAGT
CCCTCTCCCTCCAGGCTCCCACCCCCTCAGTCAGACTTACATCTGGCATC
CAACAGGGGGCACCAGAGACTGCTCAGGCTGGTGAACACTGCAGCTAGAA
AGCAGAGAGGACTCTGGCACCCTGAGCTCTGCAGATGGAAGATCACAAAA
CTTTAACAACGAGCCCCTTTACTCCTTATTATCCCTTCAAGTGGAATAAA
ACTCACTCTTAAATACCCAGAGTGCACCTTCTTCACTCCAGGATAAGAAT
GTTGTAACAGTTGCTAAACTCTCTGCTTGCCTCTGCAAAGAGATAGACTA
GTAGTACTGCCATGAACACAGGAATGTGGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_k17.b1 MSMg01no307_k17.b1 CHROMAT_FILE:
MSMg01no307_k17.b1 PHD_FILE: MSMg01no307_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:47 2005
         (371 letters)



>mm_chr9_98728142_98728913
          Length = 772

 Score =  671 bits (347), Expect = 0.0
 Identities = 364/371 (98%), Gaps = 5/371 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcttctctcc--tccacactctttgtaagcatcagcctttataactccagctttga 61
           ||||||||||||||  ||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 572 gaattcttctctcctttc--cactctttgtaagcatcagtctttataactccagctttga 515

                                                                       
Query: 62  ggaccctaggttccctagacaacacttggcctggccaaaatgtggcagtctccggttcca 121
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaccctaggttccccagacaacacttggcctggccaaaatgtggcagtctccggttcca 455

                                                                       
Query: 122 tttagcttggctggggtaatgtttatatttttcccttaaaggccatttataggacaaaac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tttagcttggctggggtaatgtttatatttttcccttaaaggccatttataggacaaaac 395

                                                                       
Query: 182 taacaataaacactctcattaacattaaaaaaaagaaatctcaaaactttgcaacaagag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taacaataaacactctcattaacattaaaaaaaagaaatctcaaaactttgcaacaagag 335

                                                                       
Query: 242 tttccagaatgtgattttttttt-ccccttcacaaaattatactctgattagcatctatt 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 334 tttccagaatgtgattttttttttccccttcacaaaattatactctgattagcatctatt 275

                                                                       
Query: 301 gacttcatgttcctggctgttacttggttcatggacgaatcccaaaggttctcgcccttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gacttcatgttcctggctgttacttggttcatggacgaatcccaaaggttctcgcccttg 215

                      
Query: 361 ggaatccccag 371
           |||||||||||
Sbjct: 214 ggaatccccag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space:   276206
Effective search space used:   276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no307_k17.g1 MSMg01no307_k17.g1 CHROMAT_FILE:
MSMg01no307_k17.g1 PHD_FILE: MSMg01no307_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:47 2005
         (281 letters)



>mm_chr9_98546158_98546838
          Length = 681

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacttacatctggcatccaacagggggcaccagagactgctcaggctggtgaacactgc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 agacttacatctggcatccaacagggggcaccagagactgctcaggatggtgaacactgc 260

                                                                       
Query: 61  agctagaaagcagagaggactctggcaccctgagctctgcagatggaagatcacaaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctagaaagcagagaggactctggcaccctgagctctgcagatggaagatcacaaaact 320

                                                                       
Query: 121 ttaacaacgagcccctttactccttattatcccttcaagtggaataaaactcactcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaacaacgagcccctttactccttattatcccttcaagtggaataaaactcactcttaa 380

                                                                       
Query: 181 atacccagagtgcaccttcttcactccaggataagaatgttgtaacagttgctaaactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacccagagtgcaccttcttcactccaggataagaatgttgtaacagttgctaaactct 440

                                                    
Query: 241 ctgcttgcctctgcaaagagatagactagtagtactgccat 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcttgcctctgcaaagagatagactagtagtactgccat 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)