BAC Information

Click to search

BAC

Clone NameMSMg01-311H08
Chromosome9 (Build37)
Map Location 17,304,953 - 17,305,141
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311H08.T7 (MSMg01no311_h08.b1)MSMg01-311H08.TJ (MSMg01no311_h08.g1)
ACCAG433955AG433956
length822812
length of high quality
(start - end)
189 (131 - 319)248 (78 - 325)
definitionCHROMAT_FILE: MSMg01no311_h08.b1 PHD_FILE: MSMg01no311_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:19 2005CHROMAT_FILE: MSMg01no311_h08.g1 PHD_FILE: MSMg01no311_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGTATTCCCATAGGAATAAATCAGGGTTGTTTCTTTTTTTTTTCCTTCA
AAAGAAAAATAAAACATAAAGAGTTGACCAGGAAAAGGACAAATGTCATG
TATAGAAGTGAGGTAGGAAATGGACAACCCCACAGTGAGGTCAAGGATGA
AAGAGAGTCCTCAGGGAAGGCTGGGGCCAATCACAGACCTCTGCTGCACT
TTCTCTATAAATGCCCTTACATTTCATTATATTTCTCTGGCAGGCATCCC
ATGTCTCTTTATGTCTGCAGGAAGGGTTTTTTTTAATAATGTCGCTCAGG
CGAGGGAAGAATAATTTCGNGTTAGTTTCCCAGACAGGCCCACTGATTTC
GTTATTTTATAATGCTTTTGTTCTCCCCCCCCAAAACCCTATTTTAAAAA
CGGGGGCTTCGTTCGGGGGCTCTCCTTTTTCCTCTTATCTTTGCTTTCCT
TCCCATGCCTTTGTCAACTTCGCTTTATCACTCTTTTTGCTTTCTATGTT
TTTTACTCTTCTCCCCCTGTTCTTTTCTTACCTTTTCTTTCCCTTTGTTG
TATTCTTCTTTCTCTTTTTCACTCCCCGTCTCTCTTTTTTCTTTCCTTAT
TTTCCCCTCCTGTCCTATTTCCCGTTACGCACGCCTATTATTTTTCTTTC
TTTATTCTATATTCTCTCCTTCACTCTTTCCATCTATACCCTTCCCCTAT
TTTTGTATTATCTCTATCACCCGCTTTCTTCCATTTTTTTCCACTATTTT
ACTTTTTATTTCTTTGTTTCCT
TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTTTTGCTCTGTACCCTGTT
TTTCAATTGGGTTACTTAGTTGGTTATGCCTAATTCTTGAGTTCTTTATA
TATTTTGGATATTAGTCCTTGTCAGATGTAGTGTTTGTGAAGATTTTTTC
CCACTTTGCAGGCTGTAAGCTTGTCCTCTTGAGGGAATCCTTTGCCTTTC
AAAAAGCTTTTGAGTTTCATGAAGTCCCATTTATTAATTGTTGATATTAG
TGGCTAACTTTCTATTTTTCTGATCATATATGTGCCTCCTGTGTCAGTGA
GTTTGAGGCATTTCTTTTACTTCTTATCCCCCCCCCCCCCCCGGTTTTAT
GTTGATGTCTTTGTTCTATTCCCCCTCCCCCAAAAAAAAAAAAAAAAAAA
TGGGGGGGGTGGGGGGTTTTCCTTACTCCATACTCTCTATTACACTTAGC
CCCCTTTTGCTTTAAGGTATTTCCCCCCTCCTCCTTACAAATTCTTTTTC
TTCCATATACTTTATACCATTTACTTTCCTCGACCCCTCTTCTTTTATAT
TATATCGCTGACATTTATCTCCTTTTTTTTTCTTTTTTCCCTTCTTGCCC
TATCCCCTTTCATTTTTATTACCCCTTTCTTTTTGTTTTTTCCCTATTCC
TTTTCCTCGCTCCTTTTTTTTTTTGTTTTTTCCGCTTCAATTGTTTTCCA
CGTGCTTTTATTTTCTCGCTTTTTTCTCTCCCCCATTTACATTTTTTTCT
TTTCCTCTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_h08.b1 MSMg01no311_h08.b1 CHROMAT_FILE:
MSMg01no311_h08.b1 PHD_FILE: MSMg01no311_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:19 2005
         (189 letters)



>mm_chr9_17304753_17305341
          Length = 589

 Score =  342 bits (177), Expect = 6e-99
 Identities = 186/189 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaaaaggacaaatgtcatgtatagaagtgaggtaggaaatggacaaccccacagtgagg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggaaaaggacaaatgtcatgaatagaagtgaggtaggaaatggacaaccccacagtgagg 330

                                                                       
Query: 61  tcaaggatgaaagagagtcctcagggaaggctggggccaatcacagacctctgctgcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 329 tcaaggatgaaagagagtcctcagggaaggctggggccaatcacagacctctgctgcgct 270

                                                                       
Query: 121 ttctctataaatgcccttacatttcattatatttctctggcaggcatcccatgtctcttt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttctctataactgcccttacatttcattatatttctctggcaggcatcccatgtctcttt 210

                    
Query: 181 atgtctgca 189
           |||||||||
Sbjct: 209 atgtctgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)