BAC Information

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BAC

Clone NameMSMg01-311H24
Chromosome9 (Build37)
Map Location 15,228,975 - 15,229,314
singlet/doubletsinglet
Overlap geneLOC100039955
Upstream geneLOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375
Downstream geneBC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311H24.T7 (MSMg01no311_h24.b1)MSMg01-311H24.TJ (MSMg01no311_h24.g1)
ACCAG433984AG433985
length755820
length of high quality
(start - end)
279 (35 - 313)177 (133 - 309)
definitionCHROMAT_FILE: MSMg01no311_h24.b1 PHD_FILE: MSMg01no311_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:22 2005CHROMAT_FILE: MSMg01no311_h24.g1 PHD_FILE: MSMg01no311_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATATA
ATTCTGAGATATGGACCATCAGGAAGCCTCTGTCTTGAGCATTGAGGATG
GTTTTTCCAGCAAAATCAAAACTTACACTATAAACTTATAAACTACTGTA
AGATGTATACACAGATAAATTCTTATAAATTAAAAAAACAAAAACAAAAA
CAGATTCTAGATGGTGGGTAGGGTGATCCGTACCAAGTCAGATGCAGGGC
ATCCAACAGCTGCTGCAGGCAGAGAAGCTGGTGGCTGATATGTCCGAGGC
CCGCAAGCAAAAGTTTTTTATTCTGAAGCAGGCCGAAGCAGCAGTTCAGG
ATTTTGGNGTGGGCTCAANAACGAAGCCCCCCTTGGATTTTTTGTTGATG
GAAGTTGGGGGCCCCCCAAACTCTTAACTNCAAAAAGCGTCCCCTGTTCC
GGAGACCTCTTATAACATGCACGTCTCTCAGAACTACTTTTGAGCATATC
CCTCATCAAGATCCTGGGTAATCTCTTTGTTCCTTGAGTTACACCCCCCG
GTCCAAAAATCCTTGCAATACTATCCCCACAAACGTACTCTACAGATATT
TACCCACTTGCTTTTGACCACTAGCAACATGTGATAATGGATACCATTCT
ACTGCCCCCCTCCTTTAAACATCTATACCCTGCCCATATATTCTTGCGAT
ATAATGCCCACAACCCCCACTCTATTAACTACACTATTCCCCTCCTATTA
TTCGC
CCCTCCCTTCCCTTTTCATTTCTCCTTTTTCTCCTCTCTCCTTTCCCCCA
CCCCCNCCCGATCCTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGCAGTAGTGAAGAT
CCGGGCTGAGCTGCCTTTGTGCGTTAGTGTTCTGACGAAGGTAGAAGTCG
AGAGTGGGGCGGCTGCTTATTTAGCTGAGGAGATTTCTAAGCAAAGTGTT
GGAGAAGGGGCTTTCTCACTCCTGGCTGCTCATAGCAAATCCAAGAGGAA
ATGAGAAATTGAGCTGGGCGTGGTGGTGCACTTAGGAGGCCAGCGTGGTC
TCCATCATGAGCTCTAGGCCAACTAAGACTACTTTTTTTGATCGTGTCTC
AAAACAAACAAACCAACAAACTAATTTTTTCTTGATCTTCACCCCATTTG
GCTGTAACCTGCCTGTAGTGCAAAATAATAATACTATAGGCATATTAGGA
AGAGAGTGTCCAGGGTGTGGCGCACAGCCCCCGTAAGTATGGGTGTGAAT
GCTCACCCTAATCCGCCCACCCCTACTGACACTTCGCCTATTTCTCTTGA
TTGGTCCTGCCACCCCGTGAAGGACTAACGTCGGTCTCCTACTCCTGCTT
GCACTAACTCCCGGCGCTTGCCGCTCCTGTATTACCTGCTCTTTCCTAAC
TAGCCAATCTAATCCCGTTTACCGATTTAATAACATTCCCGCCTTTTTTA
ACCCCTTGACTGCCTCCTGGGTCTCCCGAGTGGACCCCCCGTAATCCGGG
ACCCTTCGTTCCTCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_h24.b1 MSMg01no311_h24.b1 CHROMAT_FILE:
MSMg01no311_h24.b1 PHD_FILE: MSMg01no311_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:22 2005
         (279 letters)



>mm_chr9_15228919_15229597
          Length = 679

 Score =  371 bits (192), Expect = e-107
 Identities = 272/340 (80%), Gaps = 65/340 (19%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatataattctgagatatggaccatcaggaagcctctgtcttgagcattgagga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaattcaatataattctgagatatggaccatcaggaagcctctgtcttgagcattgagga 337

                                                                       
Query: 65  tggtttttccagcaaaatcaaaacttacactataaacttataaactactgtaagatgtat 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 336 tggtttttccagcaaaatcaaaacttacactataaacttataaactactgtaaggtgtat 277

                                                                       
Query: 125 acacagataaattcttataaattaaaaaaacaaaaacaaaaacagattctagatggtggg 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 276 acacagataaattcttataaattaaaaaaccaaaaacaaaaacagattctagatggtggg 217

                                                                       
Query: 185 tagggtgatc-------------cgt---------------------------------- 197
           ||||||||||             |||                                  
Sbjct: 216 tagggtgatccgaggggcttctgcgtgtatttgagctgtgacttggtcattccctctgca 157

                                                                       
Query: 198 ----------ac--------caagtcagatgcagggcatccaacagctgctgcaggcaga 239
                     ||        ||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gagaggccacacagagatagcaagtcagatgcagggcatccaacagctgctgcaggcaga 97

                                                   
Query: 240 gaagctggtggctgatatgtccgaggcccgcaagcaaaag 279
           ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 96  gaagctggtggctgagatgtccgaggcccgcaagcaaaag 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)