BAC Information

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BAC

Clone NameMSMg01-312E17
Chromosome9 (Build37)
Map Location 84,701,752 - 84,702,046
singlet/doubletsinglet
Overlap genenone
Upstream geneTtk, EG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312E17.T7 (MSMg01no312_e17.b1)MSMg01-312E17.TJ (MSMg01no312_e17.g1)
ACCAG434554AG434555
length737731
length of high quality
(start - end)
291 (126 - 416)537 (68 - 604)
definitionCHROMAT_FILE: MSMg01no312_e17.b1 PHD_FILE: MSMg01no312_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:20 2005CHROMAT_FILE: MSMg01no312_e17.g1 PHD_FILE: MSMg01no312_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGATTATCCTCAATGTCAGCACCATGGGTAACTACCTCTAGAAA
TCAACTTTAAATACTTTTAACCGAGCAAACCTAAAAATAAGATGGGCCCT
CTCATCCAGGACTGGAGAAGGGAAGCACAGCTCTGGGAGCTCATGTGGAG
AAACCTAGCAAAGCTGTTACCCCAAAATCAAAATATATATATATACATAA
TCTATATAACCTTGTACATGCCCATGAAAACCCCATTCTCTAGAGATTTT
TGGTTTAGTTTGGTTTGATTTTGGTTTTTTGGTGTGCTTGTGTGTGTGTG
TGTATGTCTGTCTGTCTGACTGCCTGCCTTAAAAGAAGGGTTTTCTATGA
AATGGAAGTGATGGCAACAAATGAAAAACACATCCCAGATTCCCCGAAAA
AGCATCAAAAAACAAACAAACAAACAAATAAGCAAACAATTTGAATTGCT
ATTTTGTCCCAAAGATAAATGTTTTTTAAAACTTAATACATTCAAAGATG
GAGAGAGTTAGCTTCGGCTGCAATTGTTCAAATGAATAAGCTAGGAGGCT
TTTTTTTTCCCTATTAAAAGTATGTTATTGTTCTTTGAGATTGAAAGAAA
AACTGTGAAACTTGATATTTGAAATGGCTAAAAATAATCAGCCTCCTTTT
GCCAGATAACAGAAAGGCCATGTTTGTGACGCAAACC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTATCAGAGAAATTCCCTCTACTTCTATTTTGTGGAATAGTTT
GTGCAGAACTGGATATTACCCCTTCTTTGAATGTCTGATAGAACTCTGCA
CTAAACCTATATGGTCCTGGGCTTCTTTTGGTTGGGAGACTGTTAATGAC
TGCTTCTATTTCTTTAGGGGATATAGGGCTGTTTAGATCATTAACCTGAT
CCTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAATTTGTCCATTTCA
TCCAGGCTTTACAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGAT
GGTGTTTTGGATTTCTTCAGATATGTTGTTATGTCTCCCTTTTCATTTCT
GATTTTGTTAACTACGATGCTGTCCCTGTGCCTTCTATTGAGTCTGGTTA
TTGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAGCTCCTTGTTTGAT
TGATTCTTTGAATAGTTCTTCTTGTTTCCACTTGGTTGATATTGCCCCTT
AGTTTGATTATTTCCTGCTGTCTACTCCTCTTGGGTGAATTTGCTTCCTT
TTGTTCCAGAGCTTTTATGCGTGCTGTTGAGCTGCTACTGTATGCTCTCT
CTAGCTCCTTTTTGGAGGCACTCAGAGCTATGAATTTCCCTTTTAGAATG
CTTTCACTGCGTCCCATAATTTTGGCTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_e17.b1 MSMg01no312_e17.b1 CHROMAT_FILE:
MSMg01no312_e17.b1 PHD_FILE: MSMg01no312_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:20 2005
         (291 letters)



>mm_chr9_84701676_84702364
          Length = 689

 Score =  493 bits (255), Expect = e-144
 Identities = 283/297 (95%), Gaps = 10/297 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacctaaaaataagatgggccctctcatccaggactggagaagggaagcacagctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caaacctaaaaataagatgggccctctcatccaggactggagaagggaagcacagctctg 312

                                                                       
Query: 61  ggagctcatgtggagaaacctagcaaagctgttaccccaaaatcaaaatatatatatata 120
           |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||
Sbjct: 311 ggagctcatgtggagaaacctagcaaagctgttaccccaaaaccaaa--atatatatata 254

                                                                       
Query: 121 cataatctatataaccttgtacatgcccatgaaaaccccattctctagagatttttggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cataatctatataaccttgtacatgcccatgaaaaccccattctctagagatttttggtt 194

                                                                       
Query: 181 tagtttggtttgattttggttttttggtgtgc-t-------tgtgtgtgtgtgtgtatgt 232
           |||||||||||||||||| ||||||||||||| |       |||||||||||||||||||
Sbjct: 193 tagtttggtttgattttgtttttttggtgtgcgtgtgtgtgtgtgtgtgtgtgtgtatgt 134

                                                                    
Query: 233 ctgtctgtctgactgcctgccttaaaagaagggttttctatgaaatggaagtgatgg 289
           ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 133 ctgtctgtctgactgtctgtcttaaaagaagggttttctatgaaatggaagtgatgg 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 689
Length adjustment: 9
Effective length of query: 282
Effective length of database: 680
Effective search space:   191760
Effective search space used:   191760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)