BAC Information

Click to search

BAC

Clone NameMSMg01-312K03
Chromosome9 (Build37)
Map Location 34,306,974 - 34,307,284
singlet/doubletsinglet
Overlap geneKirrel3
Upstream geneLOC100042343
Downstream geneSt3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312K03.T7 (MSMg01no312_k03.b1)MSMg01-312K03.TJ (MSMg01no312_k03.g1)
ACCAG434796AG434797
length740744
length of high quality
(start - end)
315 (46 - 360)670 (75 - 744)
definitionCHROMAT_FILE: MSMg01no312_k03.b1 PHD_FILE: MSMg01no312_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:45 2005CHROMAT_FILE: MSMg01no312_k03.g1 PHD_FILE: MSMg01no312_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTTTTCATCTCTGGGAAGAGATACTAAACTCGAGGGACACCATT
CGAGGAAACTTGCCACCAATTGCATGTGTTTAATAGGGTGTCCTTCTAAA
ATGTCAATGCCAGGCTAAAAGCAGGTATACTGTACTATGCTCTTCAGGAC
AAACGGTAGGAGGGTGGCCCCAAAACTCCTTACCATCATTCTTTCTAGTA
ATCTCCAATGTGCCAGCTTGCCCTTCAGAGTTATGCGATGTACCTGAGCG
CCCCCCTCCCAAGTTAGTCCATGCATCAACAATTGAAGTTGTGGAGCTGT
GATGAAGGAATTATTTTACCATTGCCCGCCGCATACCACAGTCTTGCCTG
GTCTGCATGACCCAACCCCCTGGTAGAACTGGTCACTGATGTTGCTTGAA
GTCATCGGATGTCATGTGACATTCTGTTGATTTAGGTTGTTAGTGGAATT
TTCTGTGAGGTTTGCCTAAATCCAAACCACATTCCTTACTGGACTCACCA
TTGTAGTCGTCCATCGCTGTTGTTACTGCAATGAGGTGAGCTGTTACCTG
CTCAATGTGTCTTTCCAGCTGCTGTTCCCAGGCTTAGGAGGCAGCAAAGT
TAGAGAGAAGATATTTAGTCTTCAGTGAACAGGGAGATTAAGTGCCGAGT
GACAGAGACCATCTAAGCAGCTTCTGTCAAAACAGAAAGG
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CTGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAA
GGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTTCTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCT
AAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_k03.b1 MSMg01no312_k03.b1 CHROMAT_FILE:
MSMg01no312_k03.b1 PHD_FILE: MSMg01no312_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:45 2005
         (315 letters)



>mm_chr9_34306770_34307484
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgttttcatctctgggaagagatactaaactcgagggacaccattcgaggaaac 64
           ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattctgttttcatctctggaaagagatactaaattcgagggacaccattcgaggaaac 264

                                                                       
Query: 65  ttgccaccaattgcatgtgtttaatagggtgtccttctaaaatgtcaatgccaggctaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgccaccaattgcatgtgtttaatagggtgtccttctaaaatgtcaatgccaggctaaa 324

                                                                       
Query: 125 agcaggtatactgtactatgctcttcaggacaaacggtaggagggtggccccaaaactcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcaggtatactgtactatgctcttcaggacaaacggtaggagggtggccccaaaactcc 384

                                                                       
Query: 185 ttaccatcattctttctagtaatctccaatgtgccagcttgcccttcagagttatgcgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaccatcattctttctagtaatctccaatgtgccagcttgcccttcagagttatgcgat 444

                                                                       
Query: 245 gtacctgagcgcccccctcccaagttagtccatgcatcaacaattgaagttgtggagctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 gtacctgagcgcccccctcccaagttagtccatgcatcaacaattgaagttgtggagatg 504

                      
Query: 305 tgatgaaggaa 315
           |||||||||||
Sbjct: 505 tgatgaaggaa 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)