Query= MSMg01no312_n05.b1 MSMg01no312_n05.b1 CHROMAT_FILE:
MSMg01no312_n05.b1 PHD_FILE: MSMg01no312_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:59 2005
(313 letters)
>mm_chr9_33217223_33217936
Length = 714
Score = 576 bits (298), Expect = e-169
Identities = 307/310 (99%), Gaps = 1/310 (0%)
Strand = Plus / Minus
Query: 5 gaattcagataatttaggaagttcacttctgaagag-acatactcttattgttggcttgt 63
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 471 gaattcagataatttaggaagttcacttctgaagagcacatactcttattgttggcttgt 412
Query: 64 gaacgttgaccttctaaagccaaataattggaaacatgttgttatttttaattaggttgc 123
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaacgttgaccttataaagccaaataattggaaacatgttgttatttttaattaggttgc 352
Query: 124 gtatagattgatttggggttttacttagattttcttgccatctctaataatgataatctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtatagattgatttggggttttacttagattttcttgccatctctaataatgataatctg 292
Query: 184 cttcttccattctaagcattctcatatgcttccctctttatattgtaccatatagatctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cttcttccattctaagcattctcatatgcttccctctttatattgtaccatatagatctt 232
Query: 244 caaatatcatattgattggattacgtgacctttattttattttatcttattttattttga 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 231 caaatatcatattgattggattacgtgtcctttattttattttatcttattttattttga 172
Query: 304 gagagcgttt 313
||||||||||
Sbjct: 171 gagagcgttt 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space: 214320
Effective search space used: 214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no312_n05.g1 MSMg01no312_n05.g1 CHROMAT_FILE:
MSMg01no312_n05.g1 PHD_FILE: MSMg01no312_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:00 2005
(290 letters)
>mm_chr9_33048905_33049594
Length = 690
Score = 540 bits (279), Expect = e-158
Identities = 285/287 (99%)
Strand = Plus / Plus
Query: 1 tttcctcaagtccccaaagaacatgtcaaaagattctttgacttatttcttcatctcttt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctcaagtccctaaagaacatgtcaaaagattctttgacttatttcttcatctcttt 260
Query: 61 ccctcacaaagaggcacagcattcatcacatttcagggaagttctgtgttataaagaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ccctcacaaagaggcacagcattcatcacatttcagggaagttctgtgttagaaagaagc 320
Query: 121 aaatgagcttcagaaccatgtcatgttctcctgttcacatgagcaagaacaacatgcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgagcttcagaaccatgtcatgttctcctgttcacatgagcaagaacaacatgcaaa 380
Query: 181 ttccacctggcattttgaattagtgtatgtaggactagacgttcaaatcatgttcttttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccacctggcattttgaattagtgtatgtaggactagacgttcaaatcatgttcttttc 440
Query: 241 agtcacctttgctccagagcatctgtggagcaccattttgagcctca 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcacctttgctccagagcatctgtggagcaccattttgagcctca 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
