BAC Information

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BAC

Clone NameMSMg01-313F02
Chromosome9 (Build37)
Map Location 58,758,551 - 58,758,868
singlet/doubletsinglet
Overlap geneNeo1
Upstream geneUbl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4
Downstream geneLOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313F02.T7 (MSMg01no313_f02.b1)MSMg01-313F02.TJ (MSMg01no313_f02.g1)
ACCAG435281AG435282
length1,2621,267
length of high quality
(start - end)
318 (515 - 832)319 (71 - 389)
definitionCHROMAT_FILE: MSMg01no313_f02.b1 PHD_FILE: MSMg01no313_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:52 2005CHROMAT_FILE: MSMg01no313_f02.g1 PHD_FILE: MSMg01no313_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAATTTNNNNNNAATTCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTACAACTTAGTAAAACGATAACCCCCTCCAAATGAG
CAAAAGATTTGGATGGACTACTTTAAAGAAGACCCCCGAGCAGACAGTAA
GGGTGTAAGGTAATATATGAAGAAGATTTACGAATGGAAAATCTTGCAAG
GTACCCCACGCTTAGTACTGTTAATTGTCGAGAGAATTGCAAGTATAAAA
CCTCAATGAAATACCACTGTATGTCCTCTAGAATTCTTACATTTGCTGTT
AAAAATGCTGATAGTACAGCTTTGTAAAGTGGAGGTTTATGTATAAAGTT
AGGCATACAACTTAGCAATCCCACTCAGATGCTTAACCAAGAGAAATGAA
AACATGTACCCACTTAAAGGCTTAAAAAAAGATACTTTATTTATTATAGC
CTCAGGAGGGATTTTTTTTATACCCCCCCTCAATTAGTTAATACCCCACT
GAAAAATAGCGTTGTCATAGAAACTACTGAGTAATTAAAATTGATAGGAT
TGGCTATCAGTATATACAGCAGAAGAAATGAGTCTAAGAAATGTGCTGAG
CAAAAAGCTAAACACAAAATAATGTATAGTTATTTTTAAAATATTAAAAA
ATATGCAAAACAGCTACAATGACAAATTTATAATCTATGGTTGCATCCTC
AGTATTAGAAATTGATGTTTAAGAGCATAGCTACTTGGAAATGTCCTAAT
TTCTCTATTTAGGGATTAATTACATGAATATATTAATTTGTCAAAACTTA
CTATCCCTTTAAATACATTTATTTTATGCTAATTTTATCTCATAGGTTAA
TTTTAAAAGCAAAATTTTCTTTAATAATGAATTATGGACCATCAAGATAA
CTGTCTTAGTGGTTTGGCTTTTTTTTTGTTTTTTTTTGCTTTTTTTTTTT
TTTTTTTTTGCCGGGACAAAACCCCCTTACCCAAAACCAGTTTGGGCAGG
AAAGGCTTATTTTACCTACCCCTCCCTATTGCTGTCCCCCCCCGAAAAAG
GCCCGGAAAAGCAACCCCCCCCGTGAAGAACCCCGGAACCCAAACCTTAT
CCCATAGCCCCCACAAGCGGGCCCCCCCCCCGCTTATCTGCTTGTTTCCC
ACTAACCTGGCCCACCCCCTTTAAACAAATCTTCAATCTCTACTCCCGCC
CTTGGCACCCTTCCCCCCTGGCGGGGCGCCCTCCCCTCCCTCCACATCAA
ACCATCTCCCCG
NNTTTCTGAGGCGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGAGGGGAACAATTGCGTCCAGTCCTGCA
GACAGCATTTCCCAGCACTCCCCCCATCCTCCAGGCCTCACAGCCTTCTC
AGATATCTTTCATTGTTAATGCAGTCAGACCTCTTCTCTTTATGTCATCT
TTTTTGGATGTGTGCATATGGGAGGAAGGTGTGTGTGTGTGTGTGTGCTT
GTGAGAGGGTGCACAGAGGTCAGAGGAAGACTCTGGGTATTTTCTTCTAT
CAGTCTTCACTGTGTTTTTTTGAGGCCAGGTCTCTTAATGAACTTGGAGC
TCACAGTTTTTGGCTAAGCTGGTAACCAGCAAGCTCCAGAAATCTTCTCT
CCACCTCAGTGCCCAGGTCCCAGGGACGAATGTTATCATGCCTTTTTTTT
TTTTCCCCCCCCGNNAGCCCACCTCTCCCCCAAAAAAAAAGGGGGGGGNG
NTTTNNNTGNTGANACCTCTCTCCTGCTCCNTGNTTTTTTTTACTGTCTT
ACCTTTTGACTATTTTCATTTTTCATAGCCTTTCATTTCAGTTTTACATT
TAAGTCCTTTGTTACATTTGGAATTTATTTCTCAACTTGGCCCGAGACAC
AACTATTTTCCAGCTACGCAGCATTGCAAAGGACCTTTTCTTTGCATTAA
AACAGAAAGCTTCTCTGGCAACATTTTATCATCTCTCCCTTACTACATTT
TTCCCTCCCCTAACTTGGCCCAACGTCTCACACCCCAACCCAATCTCACT
CTCCCCTATGGTACACGGACCTCCTCCTCTCCCTCTCATGCTCTACACTT
TATCTTTGCCTCTCCCATTCCCTACCCTACCCACTTTCAACCGTTTCCCC
CTTCCTCCTTACTTCCCCTCCCTCCTCCTTTTCACAGGTCCGTCTTTTGT
CTTCCTCCACTCCTCCTTACTCCTCTTTAATCACACCCTCCGTTCCCATC
GTCTACCTTCTCTCTCTACCCACTCTTCTCCCTCCTCCTTCCTATCCTCT
CCCCTATTCCCCTCCACATCTCTCCTCTCTCCTACACTCCCTTCCTTCCA
CCTCCCTTTTCTCCTCCTCTCCCCTCCCCCTCCCCTTACCTACTCTCTCA
CCCCACCCTCCCCCTCGTACTCACCTCTTCACTTCACTCCCCCTACTCCC
CACTCACTCTACTCTACCTCACTCCTCATCCTCCACCTCTCCTTTACCGC
TCTCTCCTCCTCTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_f02.b1 MSMg01no313_f02.b1 CHROMAT_FILE:
MSMg01no313_f02.b1 PHD_FILE: MSMg01no313_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:52 2005
         (318 letters)



>mm_chr9_58758211_58758928
          Length = 718

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatagaaactactgagtaattaaaattgataggattggctatcagtatatacagcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tcatagaaactactgagtaattaaaattgataggattggctatcagtatatacagcagaa 599

                                                                       
Query: 61  gaaatgagtctaagaaatgtgctgagcaaaaagctaaacacaaaataatgtatagttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gaaatgagtctaagaaatgtgctgagcaaaaagctaaacacaaaataatgtatagttatt 539

                                                                       
Query: 121 tttaaaatattaaaaaatatgcaaaacagctacaatgacaaatttataatctatggttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tttaaaatattaaaaaatatgcaaaacagctacaatgacaaatttataatctatggttgc 479

                                                                       
Query: 181 atcctcagtattagaaattgatgtttaagagcatagctacttggaaatgtcctaatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atcctcagtattagaaattgatgtttaagagcatagctacttggaaatgtcctaatttct 419

                                                                       
Query: 241 ctatttagggattaattacatgaatatattaatttgtcaaaacttactatccctttaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctatttagggattaattacatgaatatattaatttgtcaaaacttactatccctttaaat 359

                             
Query: 301 acatttattttatgctaa 318
           ||||||||||||||||||
Sbjct: 358 acatttattttatgctaa 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)