BAC Information

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BAC

Clone NameMSMg01-313P09
Chromosome9 (Build37)
Map Location 6,409,732 - 6,410,416
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919
Downstream geneLOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313P09.T7 (MSMg01no313_p09.b1)MSMg01-313P09.TJ (MSMg01no313_p09.g1)
ACCAG435737AG435738
length1,2311,251
length of high quality
(start - end)
316 (503 - 818)733 (134 - 866)
definitionCHROMAT_FILE: MSMg01no313_p09.b1 PHD_FILE: MSMg01no313_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:16 2005CHROMAT_FILE: MSMg01no313_p09.g1 PHD_FILE: MSMg01no313_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGTTTTNNNNNAAATCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTAGCTCTGTACTTTAATCTTAATGGGGTTATT
TGAATTTCTGGAGTTTACTTTCATGGGCTCTTTGTATATATTGGATATTA
GTCCCCTATAAGATTTAGGATTGGTAAAAATTCTTTCCCTCTCTGTTGGT
GGTCTTGTCTTATTGACAGTATCTTTTGCCCTACAATAGCTTTGCCATTT
TATGAGGTCCCATTTGTCGATTCTTGGTCTTACAGCACAGGCCATTAGTG
TTCTGTTTAGGAATTTTTCCCCTGTGCCCATATCTTCGATGCTTTTCTCC
ACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATGTGGAGTTCTTT
GATCTATTTAGACTTGAGCATTGTACAAGGAGATAAGAATGGGTCAATTC
TCATTCTTTTTTTTGATAACCGCCAGTTGTGCAAGCACCATTTGATGAAA
ATGCTGTCTTTTTTTCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAA
ATGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTTTTATCACA
ATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGT
TCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTCGGNTTTTTGTTATTCC
AGATGAATCTGACGATTGCCCTTTCTAATTCGTTGAAGAATTGAGTTGNA
ATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTTTGCAGATAGCC
ATTTTACAATGTTGATCCTGCCCATCTCTGACCTGGGAAATCTTTCATCT
TCTGAGACCTTCTTTAATTCTTTCTTCAAAACTTGAAGTTCTAATAAATA
AAACTTTTACTTTTTTAATTTAAATCCCCCCCATATTTTTATATATATTC
GATATTTTTCAAAGGGTTTTTTCTCCCATTTCTTCTTCATTCTTTTTTTT
CTTTCTCCTTAAATAGTATCCTTTCTCTTCTGCTTATTTTTTTCTATCAA
CCCCTCTGCAACTTTACTATTTTCTTTCCATTTTCTTACTTATTACTCTT
TTTTCCTCTCTACTATCTCTCTCTTCAATCCCTTCATTACTCCTATTTCT
TTTCTCTTATTGTCTCCCATTCCTACTCTTG
CCGAACTTNNNNNAAACGATGCCAGNCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCATGGACAAATGCTATGTT
GACCTCCACAGTAAGTCCTTTAAACTGTTAGGTTCCCTAAGGAGACACTG
GCCTTTCAGATATAGCTTTCTATTTCTTGGTCCACTGCATTCCCTGTGCA
TTGGCCTGTGTCTGCCTTTTCAGGTGTAATCAGCTTTCAGTATTGTTTAG
AATTTCCAAGTTGTTCTTCATGTTTGACCAAAGGTTAGCACCAACTAATA
GATGTTTACTAAGCACTGGCTACATATATCAGACATTGTGCTAGTTCTTG
GGGATGCAAGGGCAACTAAAGCCCAGATGCAAAACTTCAGACATCTACAA
TTGCTCTCAGTCTGCTCCTAAGAAGGGAATAAAAGAATAGGCTTTTCACA
AAGAGGAATTTCTTGAGTCACCACTGAGAGTTGCTGTGTCCACTCCACTG
ACTGGAGGGCAGTACATCATTTCATACAGCAACAGATAAACATGAAAAGT
ACGCTCTTCTAAAGTGTCTCATGAAAACAGCAATGATGTATTAACCATTA
AATGTGATTTCTGCTGTGTGGTGTTCAGATAAAATATACCAGTGATGACA
TGGGAGTTTCTCTAAGAGACTGAGAGCAGGAGGCTAAACTTGCTGAACTT
TTGGGGAAGTGATATTAAAGAAAGAGCCTCAGAAGGTGAACAAAGCTGAA
GAACAACATGAGGTGATGTTTGAGGTGTGCTTTACAGGAGAAAAGCAGAT
TTGCCAAGTTGAATCCCATAGTTTCATGGGCTTTGGTAAAATACAGAGCC
AGAAAGACAGATTTCGAGTAGATTTACAAGTTTTTTCCTGCCCTTTTGCA
TGTAAATTCAGTTTATCACACCATGGGGAGCTATTAAAGATTTTTAATGA
GAAACTTTGATATTGGAGGCAAAATCCTTGGTGGCAGAAAAACAAAAAGC
CCGGGGGAACTGATAAAAAAAAAATGAACTCTTTCTAAAGGTTAAAAAAA
AAAGGCTTGCCGGAATTTCTTGAGGTTCTTTCCAAAACAAATTTTTGTTA
CCCCCTCCCAAGGAAATCCCTTCCAAAATTTTAAGCAGGCCTAAGTTTTC
CCACCGAAAAGGGGATCTATTTTTTTTATTCCTAAAAGTTTTAAAAATTT
TCGCGGAAGTTCTCTCTCCCTCATAATGGTGTTAACAAGAAACCTCCACC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_p09.g1 MSMg01no313_p09.g1 CHROMAT_FILE:
MSMg01no313_p09.g1 PHD_FILE: MSMg01no313_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:16 2005
         (733 letters)



>mm_chr9_6409284_6410416
          Length = 1133

 Score = 1278 bits (661), Expect = 0.0
 Identities = 679/685 (99%)
 Strand = Plus / Minus

                                                                        
Query: 49   ccactgcattccctgtgcattggcctgtgtctgccttttcaggtgtaatcagctttcagt 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 ccactgcattccctgtgcattggcctgtgtctgccttttcaggtgtaatcagctttcagt 1074

                                                                        
Query: 109  attgtttagaatttccaagttgttcttcatgtttgaccaaaggttagcaccaactaatag 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 attgtttagaatttccaagttgttcttcatgtttgaccaaaggttagcaccaactaatag 1014

                                                                        
Query: 169  atgtttactaagcactggctacatatatcagacattgtgctagttcttggggatgcaagg 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 atgtttactaagcactggctacatatatcagacattgtgctagttcttggggatgcaagg 954

                                                                        
Query: 229  gcaactaaagcccagatgcaaaacttcagacatctacaattgctctcagtctgctcctaa 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  gcaactaaagcccagatgcaaaacttcagacatctacaattgctctcagtctgctcctaa 894

                                                                        
Query: 289  gaagggaataaaagaataggcttttcacaaagaggaatttcttgagtcaccactgagagt 348
            |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 893  gaagggaataaaagaataggcttttcacaaagaggaatttcaggagtcaccactgagagt 834

                                                                        
Query: 349  tgctgtgtccactccactgactggagggcagtacatcatttcatacagcaacagataaac 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  tgctgtgtccactccactgactggagggcagtacatcatttcatacagcaacagataaac 774

                                                                        
Query: 409  atgaaaagtacgctcttctaaagtgtctcatgaaaacagcaatgatgtattaaccattaa 468
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 773  atgaaaagtacgctcttctacagtgtctcatgaaaacagcaatgatgtattaaccattaa 714

                                                                        
Query: 469  atgtgatttctgctgtgtggtgttcagataaaatataccagtgatgacatgggagtttct 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 713  atgtgatttctgctgtgtggtgttcagataaaatataccagtgatgacatgggagcttct 654

                                                                        
Query: 529  ctaagagactgagagcaggaggctaaacttgctgaacttttggggaagtgatattaaaga 588
            |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 653  ctaagagactgagagcaggaggctaagcttgctgagcttttggggaagtgatattaaaga 594

                                                                        
Query: 589  aagagcctcagaaggtgaacaaagctgaagaacaacatgaggtgatgtttgaggtgtgct 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593  aagagcctcagaaggtgaacaaagctgaagaacaacatgaggtgatgtttgaggtgtgct 534

                                                                        
Query: 649  ttacaggagaaaagcagatttgccaagttgaatcccatagtttcatgggctttggtaaaa 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533  ttacaggagaaaagcagatttgccaagttgaatcccatagtttcatgggctttggtaaaa 474

                                     
Query: 709  tacagagccagaaagacagatttcg 733
            |||||||||||||||||||||||||
Sbjct: 473  tacagagccagaaagacagatttcg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1133
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1123
Effective search space:   811929
Effective search space used:   811929
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)