BAC Information

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BAC

Clone NameMSMg01-315H10
Chromosome9 (Build37)
Map Location 58,504,118 - 58,504,473
singlet/doubletsinglet
Overlap gene2410076I21Rik
Upstream geneCyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn
Downstream geneHcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315H10.T7 (MSMg01no315_h10.b1)MSMg01-315H10.TJ (MSMg01no315_h10.g1)
ACCAG436102AG436103
length725733
length of high quality
(start - end)
370 (40 - 409)329 (76 - 404)
definitionCHROMAT_FILE: MSMg01no315_h10.b1 PHD_FILE: MSMg01no315_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:56 2005CHROMAT_FILE: MSMg01no315_h10.g1 PHD_FILE: MSMg01no315_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TACCTCTTCATGCTCCAGCAACTGTGAAAAGGAAAAACAAGGGTCCAGCA
GGAGGCAGACTTCCCCAGTTCGGGAGTGTCTTACTAGGGCAAGGTGCTGT
GTTCTGACAAAGAGAACACTCTGTCAGCAGTGTCCCAGCACCTGATTACA
AGCATCCATAAGAACAGAAACAGCCCAGGTTTGCTCTGACCTTTTTGGGC
AGATGATCCTGTGAATATAAAGTTGGATAAACTTTTGGAAGACAACTGAT
ATAAAACAAGCTTAGTATCCTACTTTCTTAAGACTGAATTTCAGCTACCT
AAGTGTACATAGGAGAATGTTTATCATAACAATGTTTACAATTAAGAATA
GAATCAAGACCCCCCACAGATGGCTCAGTGGTTAAGAGCTCTGACTGCTC
TTCCAGAGATCCTGGGTTCAATTCTCAGCAACCACGTGGTGGCTCACAAT
CATCTGTGACTATCTCTGTCCTAGCTAAAGACTATTACAGTGTACTCACA
TACATAAAATAAATAATTCTTTTTTTAAAAAAATGGGATCAAGATAAATG
GTATTTTGAGTGGCTAAAGTGAGGAATTACTCCAGACAGACTAGAACTGT
GATCAGGCCCGCAAGGTGACCCAGTGGCTAAAGGTGCTCGCTGCCAAGTA
TGATGACCTGATGACCCATGAGGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGCTTGCCTGTCAAGTGCTCCTAC
CCACTGAACCATCTATCTGGCCGTTTTCTTTTATTTTTTTTAAAGATTTA
TTTATTTATTATATGTAAGTACACTGTAGCTGTTTCCAGACGCCCCAGAA
GAGAGCATCAGATCTCATTACGGATGGTTGTGAGCCACCATGTAGTTGCT
GGGAATTGAACTCAGGACCTTCGGAAGAGCAATCAGTGCACTTAACCGCT
GAGCCATCTCTCCAGCCCCTGGCTGTTTTTTTTTTTTTTTAAACCTTCTT
TTATATGTATGAAAAATTTGCCTGCATGTATATATGTGCACCACAAGTGC
GTAGTGCCTGAAGACACCCCCACAGGGTATTGAATCTGGAACTAACAATG
TGAGCTACCATTCCAACCTGCGCATTCTGGAAGAACAGCCATGGCCTGTA
ACTGCTGAGCCATTGTTCCAGTCCTATTTGTTTCTGAGACAGGACCCCAT
TCTTATCCCAGGCAGTAGGTTGGTTCTCACATTTAGTTGTAACCCACATT
GATGCCTTGGTGTTCTACGGGCTGGAATTATATGTATGAGCTTTCATGCC
CACTCTCGGTCCCTGTTTTGCTTTCTATTTTTCGACAAAAGGTCTTGCTT
AATTACTCAGGCAGCCCTCTGAATTTGCTGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_h10.b1 MSMg01no315_h10.b1 CHROMAT_FILE:
MSMg01no315_h10.b1 PHD_FILE: MSMg01no315_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:56 2005
         (370 letters)



>mm_chr9_58503956_58504722
          Length = 767

 Score =  613 bits (317), Expect = e-180
 Identities = 350/369 (94%), Gaps = 16/369 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttacctcttcatgctccagcaactgtgaaaaggaaaaac---aagggtccagca 61
           ||||||||||||||| ||||||||||||||||||||||||||| |       ||||||||
Sbjct: 518 gaattcttacctcttaatgctccagcaactgtgaaaaggaaaaccctt----gtccagca 463

                                                                       
Query: 62  ggaggcagacttccccagttcgggagtgtcttactagggcaaggtgctgtgttctgacaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 462 ggaggcagacttccccagttcgggagtgtcttactagggcaaggtgctgtgttctgacac 403

                                                                       
Query: 122 agagaacactctgtcagcagtgtcccagcacctgattacaagcatccataagaacagaaa 181
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agagaaca--ctgtcagcagtgtcccagcacctgattacaagcatccataagaacagaaa 345

                                                                       
Query: 182 cagcccaggtttgctctgacctttttgggcagatgatcctgtgaatataaagttggataa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cagcccaggtttgctctgacctttttgggcagatgatcctgtgaatataaagttggataa 285

                                                                       
Query: 242 acttttggaagacaactgatataaaacaagcttagtatcctactttcttaagactgaatt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 acttttggaagacaactgatataaaacaagcttagtatcctactttcttaagactgaatt 225

                                                                       
Query: 302 tcagctacctaagtgtacataggagaatgtttatcataacaatgtttacaattaagaata 361
           ||||||||||||||||||||       |||||||||||||||||||||||||||||||||
Sbjct: 224 tcagctacctaagtgtacat-------tgtttatcataacaatgtttacaattaagaata 172

                    
Query: 362 gaatcaaga 370
           |||||||||
Sbjct: 171 gaatcaaga 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 767
Length adjustment: 9
Effective length of query: 361
Effective length of database: 758
Effective search space:   273638
Effective search space used:   273638
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)