BAC Information

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BAC

Clone NameMSMg01-316B02
Chromosome9 (Build37)
Map Location 89,719,687 - 89,880,821
singlet/doubletdoublet
Overlap geneRasgrf1
Upstream geneEG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik
Downstream geneCtsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316B02.T7 (MSMg01no316_b02.b1)MSMg01-316B02.TJ (MSMg01no316_b02.g1)
ACCAG436524AG436525
length748757
length of high quality
(start - end)
678 (46 - 723)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no316_b02.b1 PHD_FILE: MSMg01no316_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:44 2005CHROMAT_FILE: MSMg01no316_b02.g1 PHD_FILE: MSMg01no316_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,880,160 - 89,880,821)(89,719,687 - 89,719,977)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACCCCTAACCCCTTTACCCCATAAAAACCCCTAGCTTTCGAG
CCTTGTGGCCGACATCCGTTATCTCCTGTGTGGGTTGCATGTCGTTCCGG
AGCTCCATCATTAAACGGCCTCATGTAATTACATCAAGATGGTCCTTCGT
GATTTTTTGTGTGCACACTGAATCGGGAATTGAGTGGGGGTTTCCCCACT
AGGTTCTATCACTGCCAGGTGGACAGGAAGGCCCCAGGTAGCAACTATGC
AAAAGGAACAACACTAGTGTATTTGAGAAATAACTGTAGCAGTATCTTCT
CTGTGTAAATCTTCCATCTGCCCAAGTGGCCAGATTTGAAGTCTCCTGTC
TCTGTTTAAATTGTTCCAAGCGCAATCTTGCAATTGGGACCTAAAGAAGC
TTAGGAGTGATAGTGTATTTGGAATTAATAAGCCAAAGGCATATACAGGC
TGGTAAATTCTGTTGAAAGCTTGTTCCCTTTTGTGTATTAGCAGAACTAG
TTAACATGCTATTATTAAAGAGTTTTTCTTCATTAATTTCTAAATGTGCA
GAGTGATTTTTTCACTGTGAATATATGTAACAGTAGCACACAGTAGGCTT
TTCAGGTGCTTGCCTTTTTCTTGGTGGCAAGTGTGAACAAAGGGAGTCTG
GCAACTTTTAGATACAAGTCCTGTGGTATGTACTGTCGCAGGGCACTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCCAAAATCACAGAACAGTGGGCATGCTATGCACTC
CACGCCTAGATTCTGGATATTTGCCCTTCAGTAACACAGTGAAGGAGATG
GTGACCATGTCACGGGCAAGTGAGGACCAGCCTCAAACAGTCCAGTGTGG
ACAGAGGCAGACTTGATGGCCACGGTGGTTAGGGAAGAGAGAGTAACACA
GAACCCAGCCATAGTGTTCACTGGTGTGGTAGAGAAAGGGAGAAGTGGGA
TGGGAGGACCTTGTTCTAGCTGGGAATATAAGATGTCCATGAGATCCTGG
CCCTCTCAGACCCCAAGTACAAAGATAAGCATAACATTTGAATGCTTGGT
AATTTCTCAAGTATCCAGCACACCCTCATACAGAAGACTTGGGGTGGGGA
TTAGGTAAGTGGTGGGAAGTCACTGGTGGCCCAGTGTTGATAAACTGTTC
TGTGGGTGTGGCCCTATGTTATTGTGCAGGGAGGGGGGGGCAGGAGAGCT
GCCAGTCTGCAGGTCTTGTAAGGAACAGAGAGGACATGTGGACTTCTGGC
TGAGTGACTTGCCAAGCCCAGTGAAAGATCCAAGTAAGGTGTGGGCTCAG
GGATGTCAAGATAAGATCCTGGTTATCATTAACTTGATAAATTGAATATT
AAGAGTTATTGCTTTGCCCGAAATTGCCTTTGCGTTTTGAAATTCCTCCC
CAGAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_b02.b1 MSMg01no316_b02.b1 CHROMAT_FILE:
MSMg01no316_b02.b1 PHD_FILE: MSMg01no316_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:44 2005
         (678 letters)



>mm_chr9_89879744_89880821
          Length = 1078

 Score = 1234 bits (638), Expect = 0.0
 Identities = 656/662 (99%)
 Strand = Plus / Minus

                                                                        
Query: 17   cctaacccctttaccccataaaaacccctagctttcgagccttgtggccgacatccgtta 76
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 cctaagccctttaccccataaaaacccctagctttcgagccttgtggccgacatccgtta 1019

                                                                        
Query: 77   tctcctgtgtgggttgcatgtcgttccggagctccatcattaaacggcctcatgtaatta 136
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1018 tctcctgtgtgggttgcatgtcgttccggagctccgtcattaaacggcctcatgtaatta 959

                                                                        
Query: 137  catcaagatggtccttcgtgattttttgtgtgcacactgaatcgggaattgagtgggggt 196
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 958  catcaagatggtccttcgtgattttttgtgtgcacgctgaatcgggaattgagtgggggt 899

                                                                        
Query: 197  ttccccactaggttctatcactgccaggtggacaggaaggccccaggtagcaactatgca 256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  ttccccactaggttctatcactgccaggtggacaggaaggccccaggtagcaactatgca 839

                                                                        
Query: 257  aaaggaacaacactagtgtatttgagaaataactgtagcagtatcttctctgtgtaaatc 316
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  aaaggaacaacactagtgtatttgagaaataactgtagcagtatcttctctgtgtaaatc 779

                                                                        
Query: 317  ttccatctgcccaagtggccagatttgaagtctcctgtctctgtttaaattgttccaagc 376
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 778  tcccatctgcccaagtggccagatttgaagtctcctgtctctgtttaaattgttccaagt 719

                                                                        
Query: 377  gcaatcttgcaattgggacctaaagaagcttaggagtgatagtgtatttggaattaataa 436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  gcaatcttgcaattgggacctaaagaagcttaggagtgatagtgtatttggaattaataa 659

                                                                        
Query: 437  gccaaaggcatatacaggctggtaaattctgttgaaagcttgttcccttttgtgtattag 496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658  gccaaaggcatatacaggctggtaaattctgttgaaagcttgttcccttttgtgtattag 599

                                                                        
Query: 497  cagaactagttaacatgctattattaaagagtttttcttcattaatttctaaatgtgcag 556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598  cagaactagttaacatgctattattaaagagtttttcttcattaatttctaaatgtgcag 539

                                                                        
Query: 557  agtgattttttcactgtgaatatatgtaacagtagcacacagtaggcttttcaggtgctt 616
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 538  agtgattttttcactgtgaatatatgtaacagtagcacacagtaggcttatcaggtgctt 479

                                                                        
Query: 617  gcctttttcttggtggcaagtgtgaacaaagggagtctggcaacttttagatacaagtcc 676
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478  gcctttttcttggtggcaagtgtgaacaaagggagtctggcaacttttagatacaagtcc 419

              
Query: 677  tg 678
            ||
Sbjct: 418  tg 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no316_b02.g1 MSMg01no316_b02.g1 CHROMAT_FILE:
MSMg01no316_b02.g1 PHD_FILE: MSMg01no316_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:44 2005
         (291 letters)



>mm_chr9_89719487_89720177
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacagtgggcatgctatgcactccacgcctagattctggatatttgcccttcagtaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 cagaacagtgggcatgctatgcactccacgcctagattctggatatttggacttcagtaa 260

                                                                       
Query: 61  cacagtgaaggagatggtgaccatgtcacgggcaagtgaggaccagcctcaaacagtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagtgaaggagatggtgaccatgtcacgggcaagtgaggaccagcctcaaacagtcca 320

                                                                       
Query: 121 gtgtggacagaggcagacttgatggccacggtggttagggaagagagagtaacacagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtggacagaggcagacttgatggccacggtggttagggaagagagagtaacacagaac 380

                                                                       
Query: 181 ccagccatagtgttcactggtgtggtagagaaagggagaagtgggatgggaggaccttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagccatagtgttcactggtgtggtagagaaagggagaagtgggatgggaggaccttgt 440

                                                              
Query: 241 tctagctgggaatataagatgtccatgagatcctggccctctcagacccca 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagctgggaatataagatgtccatgagatcctggccctctcagacccca 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)