Query= MSMg01no316_c03.b1 MSMg01no316_c03.b1 CHROMAT_FILE:
MSMg01no316_c03.b1 PHD_FILE: MSMg01no316_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:48 2005
(283 letters)
>mm_chr9_9193237_9193920
Length = 684
Score = 493 bits (255), Expect = e-144
Identities = 276/289 (95%), Gaps = 11/289 (3%)
Strand = Plus / Plus
Query: 5 gaattctccttgttctccacctccagccaataggctactactgtcactgtcttccatgcc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccttgttttccacctccagccaataggctactactgtcactgtcttccatgcc 264
Query: 65 tttaatgagtctagaagtggttacattaagaagtggctttcacaagttgaaaagctgtct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaatgagtctagaagtggttacattaagaagtggctttcacaagttgaaaagctgtct 324
Query: 125 tctcagctccactggatagggatgtgttctatctgcattgtctttaaccctgcagaactc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcagctccactggatagggatgtgttctatctgcattgtctttaaccctgcagaactc 384
Query: 185 tcaggtactccaaatttgttttgtagacccagaaaggcagaattgtttaagaaagttgat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaggtactccaaatttgttttgtagacccagaaaggcagaattgtttaagaaagttgat 444
Query: 245 -gggggggggaggc----------tgtaggtgtggggtgtgtatgtatg 282
||||||||| ||| |||||||||||||||||||||||||
Sbjct: 445 tggggggggggggcgggggggggctgtaggtgtggggtgtgtatgtatg 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space: 184950
Effective search space used: 184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no316_c03.g1 MSMg01no316_c03.g1 CHROMAT_FILE:
MSMg01no316_c03.g1 PHD_FILE: MSMg01no316_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:49 2005
(646 letters)
>mm_chr9_9216096_9217143
Length = 1048
Score = 1058 bits (547), Expect = 0.0
Identities = 575/585 (98%), Gaps = 2/585 (0%)
Strand = Plus / Minus
Query: 1 aaaagtatgttgcaaatgagaaatctaaaatgagttcctgcagaacaagaatggattaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aaaagtatgttgcaaatgagaaatctaaaatgagttcctgcagaacaagaatggattaaa 526
Query: 61 ttagaattatctaatttatcctactataggctaggtgataatttgtgagtctttaggaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttagaattatctaatttatcctactataggctaggtgataatttgtgagtctttaggaca 466
Query: 121 tttattaatattgtctacatatattatcaattaaaaaagtgaatggtggtctggaggaca 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 465 tttattaatattgtctacatatattatcaattaaaaaagtggatggtggtctggaggaca 406
Query: 181 aatgctcagctaagagcatttgctgtttttctagaggaccagagtgcacttcgtagctgt 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 405 aatgctcagctaagagcatttgctgtttttctagaggaccagcgtgcacttcgtagctgt 346
Query: 241 catgtaagtatgtcacaactgcttgtagctagagttctaggtaatccagtgttctcctat 300
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 345 catgtaagtgtgtcacaacttcttgtagctagagttctaggtaatccagtgttctcctat 286
Query: 301 ggtcttgacaggcactgaaaacacatgtgtgcacacatgtacaaatatagacataat--a 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 285 ggtcttgacaggcactgaaaacacatgtgtgcacacatgtacaaatatagacataataaa 226
Query: 359 aaagtaaaccttaaacaggtgtgaactagggctaacgaggtagctgagtaggtagaatgc 418
||| ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct: 225 aaaataaaccttaaacaggtgtgaattagggctagcaaggtagctgagtaggtagaatgc 166
Query: 419 ttgcctagcatgcataggactctggattcaatgtccattaccacctaaatctggatgcat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ttgcctagcatgcataggactctggattcaatgtccattaccacctaaatctggatgcat 106
Query: 479 cttgttctctgcaggtagaaacaaaaggatcagcaattttaggtttgacaacacaggaac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 cttgttctctgcaggtagaaacaaaaggatcagcaattttaggtttgacaacacaggaac 46
Query: 539 ctggaggacacccagggagactgtctcaaaaagcaataaacaagc 583
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ctggaggacacccagggagactgtctcaaaaagcaataaacaagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1048
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1038
Effective search space: 660168
Effective search space used: 660168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
