NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCTGGTCACGATTAAGATGTCTCCGGAGACATTAACAGTT
ACCCCCATGGTAGTCAAGGTTCTTTTTGGCTGTGAACCAATGGAGTCACA
AGAGAGTATTACATGAATTCTCATTAAAGGGGCGGGCTAGCCTGAGGGCA
CTTTAGAGGTGACTTAACATAACAGAAAAGATCAGTGTATCTGTGACACA
GCATCAAGTGGGAGGGGCAAAGTCCATAATGAAAAGATAGTAAGAGTTAG
GACTTGGGTTTTATTTGAATTCTACTGAAATGCTCACAATCAGAGTGCTG
TTTCAAACAGAGTGGTATTTAAAATGACTTTTTCTAATGTTGTATAGTGA
TTGACTTGGGGTACAGGGAGGGTTGCTCCATTGCTCATGCTTCAGTGAAT
ATAGTAACAGTGGAGACAGGGGAAAAGGGGGATTTGAGATGTGTTTCAGA
GGTCATGTCAATCCAAGTTGCTCAGAGAATGCATGGAGTGATAGGGGAGA
GTGGAAAGAGGAGAAAAAGAGGCAAAGGGTGGGAAGGAGAAAGGGAAGGA
GGAAAGGAAAAATTATTATGGTTACTCAGAATTTTGTCTGAGGAAGTCAC
GTACATACTGGGTATGGCTGTGTTCACCTGTAACTGCAGCACATGGCATG
TGGAGGTAGGTGTATTACGACTCATACG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAA

Query= MSMg01no316_d18.b1 MSMg01no316_d18.b1 CHROMAT_FILE:
MSMg01no316_d18.b1 PHD_FILE: MSMg01no316_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:56 2005
         (640 letters)



>mm_chr9_8445069_8446112
          Length = 1044

 Score =  870 bits (450), Expect = 0.0
 Identities = 488/502 (97%), Gaps = 4/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 143 ctgagggcactttagaggtgacttaacataacagaaa---agatcagtgtatctgtgaca 199
           |||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||
Sbjct: 343 ctgagggcactttagaggtgacttcacataacagaaaaggagatcagtgtatctgtgaca 402

                                                                       
Query: 200 cagcatcaagtgggaggggcaaagtccataatgaaaagatagtaagagttaggacttggg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cagcatcaagtgggaggggcaaagtccataatgaaaagatagtaagagttaggacttggg 462

                                                                       
Query: 260 ttttatttgaattctactgaaatgctcacaatcagagtgctgtttcaaacagagtggtat 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttttatttgaattctactgaaatgctcacaatcagagtgctgtttcaaacagagtggtat 522

                                                                       
Query: 320 ttaaaatgactttttctaatgttgtatagtgattgactt-ggggtacagggagggttgct 378
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct: 523 ttaaaatgactttttctaatgttgtatagtgattgacttgggggaacagggagggctgct 582

                                                                       
Query: 379 ccattgctcatgcttcagtgaatatagtaacagtggagacaggggaaaagggggatttga 438
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 583 ccattgttcatgcttcagtgaatatagtaacagtggagacaggggaaaaggaggatttga 642

                                                                       
Query: 439 gatgtgtttcagaggtcatgtcaatccaagttgctcagagaatgcatggagtgatagggg 498
           ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 643 gatatgtttcagaggtcatgtcaatccaagtttctcagagaatgcatggagtgatagggg 702

                                                                       
Query: 499 agagtggaaagaggagaaaaagaggcaaagggtgggaaggagaaagggaaggaggaaagg 558
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 703 agagtggaaagaggagaaaaagaggcaaagggtgggatggagaaagggaaggaggaaagg 762

                                                                       
Query: 559 aaaaattattatggttactcagaattttgtctgaggaagtcacgtacatactgggtatgg 618
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aaaagttattatggttactcagaattttgtctgaggaagtcacgtacatactgggtatgg 822

                                 
Query: 619 ctgtgttcacctgtaactgcag 640
            |||||||||||||||||||||
Sbjct: 823 ttgtgttcacctgtaactgcag 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1044
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1034
Effective search space:   651420
Effective search space used:   651420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)