BAC Information

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BAC

Clone NameMSMg01-316F02
Chromosome9 (Build37)
Map Location 76,174,841 - 76,175,364
singlet/doubletsinglet
Overlap genenone
Upstream geneGnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
Downstream geneC530008M07Rik, Tinag, LOC436082, 2310046A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316F02.T7 (MSMg01no316_f02.b1)MSMg01-316F02.TJ (MSMg01no316_f02.g1)
ACCAG436698AG436699
length778750
length of high quality
(start - end)
319 (71 - 389)524 (75 - 598)
definitionCHROMAT_FILE: MSMg01no316_f02.b1 PHD_FILE: MSMg01no316_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:02 2005CHROMAT_FILE: MSMg01no316_f02.g1 PHD_FILE: MSMg01no316_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCCAGCTATCAAAAATGAGGACATCATGAGTTTTTCAGGAAAA
TGGATGGGATATCCAAATATCATCCTGAGTAAGATAACTCAGACTCAAAA
GGATATGCATGGTATGTACTCACGAATAAGTGGATATTAGCCAAAAAGGC
ACAGAATACCTAAGATACAATCCACAGAACTCAAGAAGGTTAACAAGCAG
AAGGGCCCAGGTGAGGATGCTTCAATCACACTTGGGAGGGAGAAGAAAAC
AATCAAGGGAGGCAGAGGGAGAGAGGGAGCTGGATGGGAGAAGAGAGGGG
GAGGGGAAAGGGGAAACAAGATTAGGTAAGGGGGAGGTANNNNNNNNTNN
NTTTNTNNTTTTTTTTTTTCCCCCCCCTTTNTCTTTCTCCCCCCTCTTTC
TTCTTTCCCTATCCTTCTTTTTGCCCCTCCGCCCTCGGCCTTTCTTTTCT
CTTTCGCCCTTCCTTATCTCTCCTCTCTGTTTCTTTTCTTTCGCTCTCTC
TTTTTCCTATGTGTCTTCCTCTTCTCCTTTTCTGTCCTGCTCTTTTCTCT
GCCCTTCTCTCCTCCCGTCCGGCTGCCCTCCTTGTTCTCCCCCTATTATC
CTGCATGCCAACGATTTCTTCTTTCTTTTTTCCCCTAACCCTGCTTTTAA
CTTCCGCTCCCTCCAATTGTTCTTATACCCTTCTTCTTTTTACCACCCTC
CCCTCCCTTGCTTTCCCCCTCCTTCCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCCGAAATTCTATATTCATACTCATACTTTCAAG
TATCATCCAATTCTAGCCAGATCTCACAGCCACAACCTCTTCTCCTTCAG
CAGAACTTCGCTGGTCCCTCCCCTCCCTTCTGTCTTCCCAAGGCAATCTC
TACACGCTTTCCAGTGAAGGTTTCAAAACCCATCTTGCTTCCTTTCACCT
TTTTGCTTCTGGTTTTCCAATTTCCTCTGCTTAAAAGCCTCCCCCATTTG
CGATTGAGTGACCTCCTCTTTGTCTTTAAGGAGTCAGCTGGAGGGATGTT
CCAGTAACAAAGCAATCCACCCTGGGTTTCTGCTTGAGACAAATGTATTC
CTTCATGACCCCATGGTATTGCGCGCCTTTTCCCTACCCCAATAATGCAG
GGATTTGCAAACCTAAACAGTGTTCATCCACCAGAGGGTAGACTGATTAT
TGAGGCTGATCTTACTTCTATTGATGGCCTTAATTTCTAGATAAACTACT
GGAAATTGGGTAAATATGTGGGGAGCTGCACTCACATTTGCCATTACAAG
ATGGCGCTGACAGCTGTGTTCTAAGTAGTAAATAATCTGCACATGTGCAG
GGGCAGTTTTCTCACCATGTGGTTTGCCTTTCTCGTGATGACAACTGGGC
GGATGGGCTGCAGCCAATCAGGGAGTGACACATCCTAGGCGGAGGATAGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_f02.g1 MSMg01no316_f02.g1 CHROMAT_FILE:
MSMg01no316_f02.g1 PHD_FILE: MSMg01no316_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:02 2005
         (524 letters)



>mm_chr9_76174673_76175596
          Length = 924

 Score =  975 bits (504), Expect = 0.0
 Identities = 519/524 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatattcatactcatactttcaagtatcatccaattctagccagatctcacagccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tctatattcatactcatactttcaagtatcatccaattctagccagatctcacagccaca 633

                                                                       
Query: 61  acctcttctccttcagcagaacttcgctggtccctcccctcccttctgtcttcccaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 632 acctcttctccttcagcagaacttcgctggtccctcccctcccttctgtcttcccaaagc 573

                                                                       
Query: 121 aatctctacacgctttccagtgaaggtttcaaaacccatcttgcttcctttcaccttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aatctctacacgctttccagtgaaggtttcaaaacccatcttgcttcctttcaccttttt 513

                                                                       
Query: 181 gcttctggttttccaatttcctctgcttaaaagcctcccccatttgcgattgagtgacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gcttctggttttccaatttcctctgcttaaaagcctcccccatttgcgattgagtgacct 453

                                                                       
Query: 241 cctctttgtctttaaggagtcagctggagggatgttccagtaacaaagcaatccaccctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cctctttgtctttaaggagtcagctggagggatgttccagtaacaaagcaatccaccctg 393

                                                                       
Query: 301 ggtttctgcttgagacaaatgtattccttcatgaccccatggtattgcgcgccttttccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 392 ggtttctgcttgagacaaatgtattccttcatgaccccatggtattgtgtgccttttccc 333

                                                                       
Query: 361 taccccaataatgcagggatttgcaaacctaaacagtgttcatccaccagagggtagact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 taccccaataatgcagggatttgcaaacctaaacagtgttcatccaccagagggtagact 273

                                                                       
Query: 421 gattattgaggctgatcttacttctattgatggccttaatttctagataaactactggaa 480
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 272 gattattgaggctgatcttacttctactgatggctttaatttctagataaactactggaa 213

                                                       
Query: 481 attgggtaaatatgtggggagctgcactcacatttgccattaca 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 attgggtaaatatgtggggagctgcactcacatttgccattaca 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)