Query= MSMg01no316_k23.b1 MSMg01no316_k23.b1 CHROMAT_FILE:
MSMg01no316_k23.b1 PHD_FILE: MSMg01no316_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:30 2005
(664 letters)
>mm_chr9_80938207_80939270
Length = 1064
Score = 1207 bits (624), Expect = 0.0
Identities = 653/664 (98%), Gaps = 3/664 (0%)
Strand = Plus / Plus
Query: 4 ggaattctaatgaaatatttccagtaatatgaagtaatcaagttatcattatttgccttg 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattctaatgaaatatttacagtaatatgaagtaatcaagttatcattatttgccttg 260
Query: 64 acatttggtcttttccatctaagatctttggctccgttcttccctcattcttttcatatt 123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 acatttggtcttttccatctaagatctttggctctgttcttccctcattcttttcatatt 320
Query: 124 atgtgaaatgcctcacaacgccaggataagaaaaaaaaatctttcttctttctcaggaac 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtgaaatgcctcacaatgccaggataagaaaaaaaaatctttcttctttctcaggaac 380
Query: 184 aacttagaaacaagaactgaatgtaactatatcgatgtgatgat---ttgtatatacttg 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 aacttagaaacaagaactgaatgtaactatatcgatgtgatgatgatttgtatatacttg 440
Query: 241 gcccaggaagtggtgctattaggaggtgtagccctgttggagtaggtctgtagtaagtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcccaggaagtggtgctattaggaggtgtagccctgttggagtaggtctgtagtaagtgt 500
Query: 301 gtcatcatgagtgtgggcttcatgacccttatcttagctctctggaaaccagccttctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatcatgagtgtgggcttcatgacccttatcttagctctctggaaaccagccttctcc 560
Query: 361 tagaagccttcagatgaacatgtagaactctcagctcctcctgcaccatgcctgcctgga 420
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tagaagccttcagatgaagatgtagaactctcagctccttctgcaccatgcctgcctgga 620
Query: 421 tgttgccatgttcccatcgtgatgataaaggactgaacctctgaacctgtaagctacccc 480
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tgttgccatgtttccatcgtgatgataaaggactgaacctctgaacctgtaagccacccc 680
Query: 481 caactaaatgttgtgcttaaaagagttgccttgctcatggtgtctgttcacagcagtaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caactaaatgttgtgcttaaaagagttgccttgctcatggtgtctgttcacagcagtaaa 740
Query: 541 accctaactaagacaatcaacaaagataaaattttagaaataaaaacaaaataatcacac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accctaactaagacaatcaacaaagataaaattttagaaataaaaacaaaataatcacac 800
Query: 601 gattcaataacacatggatgtaatacagatttatacttatactatggtgtaagttttcta 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gattcaataacacatgtatgtaatacagatttatacttatactatggtgtaagttttcta 860
Query: 661 taac 664
||||
Sbjct: 861 taac 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_k23.g1 MSMg01no316_k23.g1 CHROMAT_FILE:
MSMg01no316_k23.g1 PHD_FILE: MSMg01no316_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:30 2005
(641 letters)
>mm_chr9_81096947_81097989
Length = 1043
Score = 1208 bits (625), Expect = 0.0
Identities = 638/643 (99%), Gaps = 2/643 (0%)
Strand = Plus / Minus
Query: 1 cagaaaggatgtagaaaactataaataggtgacacctggcaattccttgatgctctgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 cagaaaggatgtagaaaactataaataggtgacacctggcaattccttgatgctctgaat 784
Query: 61 gacttacaaggagtgaagaaaagaggttagtaacttaacattcccaacacatcaaataac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gacttacaaggagtgaagaaaagaggttagtaacttaacattcccaacacatcaaataac 724
Query: 121 acacctatccataaaggaagctgattttcaacttggaaactgttaataacacatcagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 acacctatccataaaggaagctgattttcaacttggaaactgttaataacacatcagaat 664
Query: 181 atatggagatggtgccatgccctgatatcaagcagctgtctgaatcactaggtgagaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 atatggagatggtgccatgccctgatatcaagcagctgtctgaatcactaggtgagaaac 604
Query: 241 accaaaactctttcctgccttgggtaagtgatacatagacagaagtggcacaggtacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 accaaaactctttcctgccttgggtaagtgatacatagacagaagtggcacaggtacaaa 544
Query: 301 gacaaaccagacagaatctggttccggagcacaaaga--tgtttcctatccacatggaac 358
|||||||||||||||||||| ||| ||| |||||||| |||||||||||||||||||||
Sbjct: 543 gacaaaccagacagaatctgcttctggaccacaaagacatgtttcctatccacatggaac 484
Query: 359 ctataacattaagtgacaagtgacagcagccttcagctgcagaagacagtatcttagagg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctataacattaagtgacaagtgacagcagccttcagctgcagaagacagtatcttagagg 424
Query: 419 gcagctgtctcatgtcacaggtgtaggaatgtcaactcattaaagagaggagcagccaca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gcagctgtctcatgtcacaggtgtaggaatgtcaactcattaaagagaggagcagccaca 364
Query: 479 caccaacagcagtgcacatgatggtatcactataaactaaacatgagaaagacaaaggtg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 caccaacagcagtgcacatgatggtatcactataaactaaacatgagaaagacaaaggtg 304
Query: 539 tgttctttgaaatcacatattgttctatacactttattccagatatgtaaatagtattaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgttctttgaaatcacatattgttctatacactttattccagatatgtaaatagtattaa 244
Query: 599 acaaatcaaggatagtaccagttaacagtggcaatcagtaatt 641
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 acaaatcaaggatagtaccagttaacagtggcaatcagtaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1043
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1033
Effective search space: 651823
Effective search space used: 651823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
