Query= MSMg01no316_m07.b1 MSMg01no316_m07.b1 CHROMAT_FILE:
MSMg01no316_m07.b1 PHD_FILE: MSMg01no316_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:36 2005
(637 letters)
>mm_chr9_112037810_112038842
Length = 1033
Score = 1129 bits (584), Expect = 0.0
Identities = 619/638 (97%), Gaps = 14/638 (2%)
Strand = Plus / Plus
Query: 5 gaattctcttctttccaatccctaatgacaaactctgaatgctaaacctgacagcacagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttctttccaatccctaatgacaaactctgaatgctaaacctgacagcacagc 264
Query: 65 tctaaaaatattctggactctcagctctctgtggtggcggcggcagggggtatggtggag 124
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 265 tctaaaaatattctggactctcagctctctgtggtggtggcggcaggggttatggtggag 324
Query: 125 ggttgtcttaagatgggagttacctatcccctagggaaattggcagtcatcatggagtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggttgtcttaagatgggagttacctatcccctagggaaattggcagtcatcatggagtaa 384
Query: 185 gccataattatggaagggacagattcccagtcccactataagctggctgggtctattatc 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccataattatggaagggacagtttcccagtcccactataagctggctgggtctattatc 444
Query: 245 cccacgaggcagtatttaatgcttgtcattattttcattactcatgtgggttcttcttac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccacgaggcagtatttaatgcttgtcattattttcattactcatgtgggttcttcttac 504
Query: 305 tctgcaggggctgggtgagtcctataatcgtctataatcagtaacctgggtccaggaatc 364
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 505 tctgcaggggctgggtgagtcctataatcgtctataat----aacctgggtccaggaatc 560
Query: 365 caag-----cccccccctgcactcctggaatgtctttgagtgaaaaatacttgaggtgta 419
|||| ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 caagggattccc-----tgcactcctgaaatgtctttgagtgaaaaatacttgaggtgta 615
Query: 420 atgcaggctcactgagcctttagtgtgagaagcactaagattagtatatcccaggtcagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atgcaggctcactgagcctttagtgtgagaagcactaagattagtatatcccaggtcagg 675
Query: 480 acacagctgacccacattttaggtcctcagaagaggataaaactcttcatggccaagaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 acacagctgacccacattttaggtcctcagaagaggataaaactcttcatggccaagaaa 735
Query: 540 aaagggaccaagagaaggggatgctgtctcagctgccggctgatgtcttcccccttcacc 599
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 736 aaagggaccaagagaaggggatgctgcctcagctgccggctgatgtcttcccccttcacc 795
Query: 600 tccacctcctcctcttccttctcctcctattccttttc 637
||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tccacctcctcctcttccttctcctcctattccttttc 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1033
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1023
Effective search space: 641421
Effective search space used: 641421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_m07.g1 MSMg01no316_m07.g1 CHROMAT_FILE:
MSMg01no316_m07.g1 PHD_FILE: MSMg01no316_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:36 2005
(595 letters)
>mm_chr9_112207506_112208500
Length = 995
Score = 1127 bits (583), Expect = 0.0
Identities = 592/595 (99%)
Strand = Plus / Minus
Query: 1 aatgatcccaaaatggaaactcacacttccaaaatcttactatcgaatcacccctctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aatgatcccaaaatggaaactcacacttccaaaatcttactatcgaatcacccctctcca 736
Query: 61 attctatgagaagacatcatttcccaggccttgttcacttggttgaaatatttacagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 attctatgagaagacatcatttcccaggccttgttcacttggttgaaatatttacagagg 676
Query: 121 aagctggtcttattttcccatcttatctgcatccttctgccaagatacacataattaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aagctggtcttattttcccatcttatctgcatccttctgccaagatacacataattaaaa 616
Query: 181 agtgatctttcattcaagctctgcatttttatggaaacacctctgcctttgagagtctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agtgatctttcattcaagctctgcatttttatggaaacacctctgcctttgagagtctta 556
Query: 241 aacctcctatgtattaagacatggggtaatttgaggaggctggagcggtccttttcaacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aacctcctatgtattaagacatggggtaatttgaggaggctggagcggtccttttcaacc 496
Query: 301 tgagatttgagtccggaatgatgaggggatcagagtcaacacgcaaaacacaagcaggtg 360
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 495 tgagatttgagtccggaatgatgaggggatcagagtcaagatgtaaaacacaagcaggtg 436
Query: 361 agaagcaagtgtagacacttctaagtcttggagggatctaagccatggctgctggagagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agaagcaagtgtagacacttctaagtcttggagggatctaagccatggctgctggagagc 376
Query: 421 agagaagatgccagaagcttctgactatctgagtgtgtgtgttgagagaaacaagtatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agagaagatgccagaagcttctgactatctgagtgtgtgtgttgagagaaacaagtatca 316
Query: 481 gaaacaattgagtaggagataggcagttgcagttgggggaggggatcagggacacattta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaaacaattgagtaggagataggcagttgcagttgggggaggggatcagggacacattta 256
Query: 541 gagttttccccaagactaacccataggaaagacttgcatatggggtctcagtatt 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gagttttccccaagactaacccataggaaagacttgcatatggggtctcagtatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
