Query= MSMg01no316_n21.b1 MSMg01no316_n21.b1 CHROMAT_FILE:
MSMg01no316_n21.b1 PHD_FILE: MSMg01no316_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:44 2005
(346 letters)
>mm_chr9_70031108_70031855
Length = 748
Score = 623 bits (322), Expect = 0.0
Identities = 344/356 (96%), Gaps = 10/356 (2%)
Strand = Plus / Minus
Query: 1 tatagtgagagcctgtctcaaaatgaataaacaaacaaaagtca--tttttttaccctgt 58
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 429 tatagtgagagcctgtctcaaaatgaataaacaaacaaaagtcatttttttttacagtgt 370
Query: 59 tatgcatggtgacacacacttggaatctcagtgacagcaagatgggaggaagagacaggg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tatgcatggtgacacacacttggaatctcagtgacagcaagatgggaggaagagacaggg 310
Query: 119 ggattcctggaactcactgggaatccgaagaatgacccaagttgtcctcatgtctctgca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggattcctggaactcactgggaatccgaagaatgacccaagttgtcctcatgtctctgca 250
Query: 179 catgtatgcatacaagtgcacctacctgaacatgcacaatacacaacatgataggtag-- 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 catgtatgcatacaagtgcacctacctgaacatgcacaatacacaacatgataggtagat 190
Query: 237 --atagatagat----agatagatagatagatagatagatagatagatagatagatagat 290
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 acatagatagatagaaagatagatagatagatagatagatagatagatagatagatagat 130
Query: 291 agatagaatatagatgatagttagacagatagataatatatgatagatagatgata 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 agatagaatatagatgatagttagacagatagataatatatgatagatagatgata 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 748
Length adjustment: 9
Effective length of query: 337
Effective length of database: 739
Effective search space: 249043
Effective search space used: 249043
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_n21.g1 MSMg01no316_n21.g1 CHROMAT_FILE:
MSMg01no316_n21.g1 PHD_FILE: MSMg01no316_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:44 2005
(534 letters)
>mm_chr9_69952634_69953567
Length = 934
Score = 978 bits (506), Expect = 0.0
Identities = 515/518 (99%)
Strand = Plus / Plus
Query: 1 agaagaggccatcaggtcccctggagctggcacttgtgagccatgtgagtcgacgcggat 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agaagaggccatcaggtcccctggagctggcacttgtgagccatgtgagttgacgcggat 260
Query: 61 cctgggaagcaaacggatccttcggaagagcagcaaacactctgaagtgctaagctatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgggaagcaaacggatccttcggaagagcagcaaacactctgaagtgctaagctatct 320
Query: 121 cctcaggccccccctccattgtttgcttatatgtgacttacatatcacaaactcttcttc 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcaggcccctcctccattgtttgcttatatgtgacttacatatcacaaactcttcttc 380
Query: 181 atagcgaacagaagaaagatagtgggagagagggagggatgtggagaggtctgcggcgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagcgaacagaagaaagatagtgggagagagggagggatgtggagaggtctgcggcgcc 440
Query: 241 ctttgggaaggctccaatattactctctaattaccaactcccaggcatatgggtattttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgggaaggctccaatattactctctaattaccaactcccaggcatatgggtattttt 500
Query: 301 cctctaaccctctgccaccaggcacacctacagcctctcggagaaaaaaaagaggaagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctctaaccctctgccaccaggcacacctacagcctctcggagaaaaaaaagaggaagta 560
Query: 361 ggcactgagtcttgggaaaatgcagaccaggtgccaaacacaggagcaagcatcccgttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 ggcactgagtcttgggaaaatgcagaccaggtgccaaacacaggagcaagcattccgttc 620
Query: 421 cagtaggaactgggaagctaatgtgagctttgtttctggaagatatatatatatggagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtaggaactgggaagctaatgtgagctttgtttctggaagatatatatatatggagag 680
Query: 481 agagagagagagagagagagagagagagagagagagag 518
||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagagagagagagagagagagagagagagagagagag 718
Score = 91.6 bits (47), Expect = 1e-22
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 485 agagagagagagagagagagagagagagagagagagagagagagaga 531
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 agagagagagagagagagagagagagagagagagagagagagagaga 105
Score = 91.6 bits (47), Expect = 1e-22
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 483 agagagagagagagagagagagagagagagagagagagagagagaga 529
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 agagagagagagagagagagagagagagagagagagagagagagaga 105
Score = 91.6 bits (47), Expect = 1e-22
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 481 agagagagagagagagagagagagagagagagagagagagagagaga 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 agagagagagagagagagagagagagagagagagagagagagagaga 105
Score = 91.6 bits (47), Expect = 1e-22
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 479 agagagagagagagagagagagagagagagagagagagagagagaga 525
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 agagagagagagagagagagagagagagagagagagagagagagaga 105
Score = 91.6 bits (47), Expect = 1e-22
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 477 agagagagagagagagagagagagagagagagagagagagagagaga 523
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 agagagagagagagagagagagagagagagagagagagagagagaga 105
Score = 89.7 bits (46), Expect = 5e-22
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 476 gagagagagagagagagagagagagagagagagagagagagagaga 521
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gagagagagagagagagagagagagagagagagagagagagagaga 105
Score = 89.7 bits (46), Expect = 5e-22
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 487 agagagagagagagagagagagagagagagagagagagagagagag 532
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 agagagagagagagagagagagagagagagagagagagagagagag 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 99
Number of extensions: 47
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 14
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
