BAC Information

Click to search

BAC

Clone NameMSMg01-316P20
Chromosome9 (Build37)
Map Location 38,271,092 - 38,271,657
singlet/doubletsinglet
Overlap geneOlfr904
Upstream geneBC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1
Downstream geneOlfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316P20.T7 (MSMg01no316_p20.b1)MSMg01-316P20.TJ (MSMg01no316_p20.g1)
ACCAG437183AG437184
length721715
length of high quality
(start - end)		674 (48 - 721)571 (77 - 647)
definitionCHROMAT_FILE: MSMg01no316_p20.b1 PHD_FILE: MSMg01no316_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:54 2005CHROMAT_FILE: MSMg01no316_p20.g1 PHD_FILE: MSMg01no316_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCTTTGTTCTCCTCTGAGTCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGT
TCTTTTTTCTTATTGACAGCTGGGCACTCTTCTTATGGAGTTGTACAAAG
TGTAAATGGATATTCCTCGTTGTCAACTTGACTTTATCTGGAATGAACTA
CAATCCAGAATTGGAAGGCTCACCCTGTGATTCTGAAAGGGATCCAGATT
GAGGTTGGTAGATCCAAGTTTCTGACCTGGTTCTTAGCATGGAGATCTTG
AGGCATAGTGGCTATGAATACCAGGAGACTAAGGGAAGGAGATCTCTGAG
TTCTGTGACTCTAGAGAACCATGGATAATACAGAATTTGGTACTGGGGAG
GCTCTAGAGGAGCAGAAGTACAAGAATGAATCCTTTAAGTATCTGGAGTT
GGTTTAATAATTTACCAGTACCTTCAACTATTGAAGCCTCTCCACATATT
GTCTCTATTTGGAGCTTGGAGAATATTGAAGGCCCATGGTGGGAACTATA
ATTCCATCTTAAAGAAATTAACTTTGATTATCTTGATTCATTAATTGTAA
CTGGTGATGAATTAGGTGACC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCACCAAGGACACATTTGCAGA
GGCCATTTTTTTTTTCTCTAACCGAATCTGCAGACACAGGAAAATGTTCT
CATTAGAAAATGATCTCTCTTCCTATCCTGGTTCTTTCCCCACCAGTGAA
GTGTGGGTTGAGTATGTGTGAGATTAGCCCCACGTGAGCATATAAATCAA
AGTGTACAATCCATCGGCAAATTATCTTATACAGAGAAGGACAGTGATAA
AAATGTAAGTAAAATTTCTAGAAAGGAAGTTGTGTAAAATGAGATGAGGA
AAGAAGCAGTTTCTTGCATTTATTTATTCTTTCAATAGAGTCCTCTCCAC
ACACATAAAATTGGAGGCCGACGCCTTGGCCACTGACTGGTGGCTGTGGA
TATTAAGTTAACTGTGGTAGAGCTAGGGATAAGGCTAGGAGATTTTGACA
TAAGAAGAAATGTCATGTTGAAGTCTGTCTCTTTTTCTTTCCAATTTTTT
ATTAGGTATTTTCTTCATTTACATTTCAAATGCTATTCTGAAAGTCTCCC
ATAACCACCCCCTGCTCTCCTACCCACCCACTCCCACTTCTTGGCCCTGG
TGTTCCCCTGTTCTGGTGCATATAAAGTTTGCAAGACCAAGGGGCCTCTC
TTCCCAATGATAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_p20.g1 MSMg01no316_p20.g1 CHROMAT_FILE:
MSMg01no316_p20.g1 PHD_FILE: MSMg01no316_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:54 2005
         (571 letters)



>mm_chr9_38271004_38271973
          Length = 970

 Score = 1013 bits (524), Expect = 0.0
 Identities = 557/568 (98%), Gaps = 2/568 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcaccaaggacacatttgcagaggccattttttttttctctaaccgaatctgcagaca 60
           ||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||||
Sbjct: 654 agtcaccaaagacacatttgcagaggcca-tttttttttctctaagagaatctgcagaca 596

                                                                       
Query: 61  caggaaaatgttctcattagaaaatgatctctcttcctatcctggttctttccccaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 caggaaaatgttctcattagaaaatgatctctcttcctatcctggttctttccccaccag 536

                                                                       
Query: 121 tgaagtgtgggttgagtatgtgtgagattagccccacgtgagcatataaatcaaagtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgaagtgtgggttgagtatgtgtgagattagccccacgtgagcatataaatcaaagtgta 476

                                                                       
Query: 181 caatccatcggcaaattatcttatacagagaaggacagtgataaaaatgtaagtaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 caatccatcggcaaattatcttatacagagaaggacagtgataaaaatgtaagtaaaatt 416

                                                                       
Query: 241 tctagaaaggaagttgtgtaaaatgagatgaggaaagaagcagtttcttgcatttattta 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tctagaaaggaagttgtgtgaaatgagatgaggaaagaagcagtttcttgcatttattta 356

                                                                       
Query: 301 ttctttcaatagagtcctctccacacacataaaattggaggccgacgccttggccactga 360
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 355 ttctttcaatagagtcctctccacacacataaaattggaggctgaggccttggccactga 296

                                                                       
Query: 361 ctggtggctgtggatattaagttaactgtggtagagctagggataaggctaggagatttt 420
           |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 295 ctggtggctgtggatattaacttaactgtggtagagctaggaataaggctaggagatttt 236

                                                                       
Query: 421 gacataagaagaaatgtcatgttgaagtctgtctctttttctttccaattttttattagg 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 235 gacataagaagaaatgtcatgttgaagtctgtctctttttctttccaa-tttttattagg 177

                                                                       
Query: 481 tattttcttcatttacatttcaaatgctattctgaaagtctcccataaccaccccctgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 176 tattttcttcatttacatttcaaatgctattctgaaagtctcccatacccaccccctgct 117

                                       
Query: 541 ctcctacccacccactcccacttcttgg 568
           ||||||||||||||||||||||||||||
Sbjct: 116 ctcctacccacccactcccacttcttgg 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space:   538560
Effective search space used:   538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |