BAC Information

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BAC

Clone NameMSMg01-317K04
Chromosome9 (Build37)
Map Location 50,882,476 - 50,882,747
singlet/doubletsinglet
Overlap geneLayn
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2
Downstream gene4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317K04.T7 (MSMg01no317_k04.b1)MSMg01-317K04.TJ (MSMg01no317_k04.g1)
ACCAG437649AG437650
length724887
length of high quality
(start - end)
272 (125 - 396)---
definitionCHROMAT_FILE: MSMg01no317_k04.b1 PHD_FILE: MSMg01no317_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:40 2005CHROMAT_FILE: MSMg01no317_k04.g1 PHD_FILE: MSMg01no317_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCTGATTTTCCCCCATTGGACTGTTACCACTCAGGCTTTCTAGAGA
AAATTAGTACTCTTTGTTTCACCCAGTTAAAGTGATTTTAAATGCTGATG
CCTGTATTGTGTAGGGGATCTGTGTTTTTGTTCCAGTGCAGATTGATGAA
GATGTTTCTATATTTTAAAATAAGTAGGAAAATATTACGGCTTCACTTGA
TGTGTACAAAGATGATGTTCATGCTCTTAGGGAGTCTTGTGAAATTATGG
GACTTAGAATAAGAGTTGCTGTGAAGTGCTTCCTTCAGTGTAGAGGGACA
CTCTGACGTCTGTTGTGGATTCCTCTACCCTGAAATCCCCTGTCTATGCA
GTGGAACTAACTTGCCCCCCTCTGGTGAGCAGAAGCTAAGAGCTTTTGTG
GGGTTTTCTGCTACTGATGCTCAGACCTCTAACCTAAAGACAATAGCTAG
AGTTTATTGAACTCTTTCCATGTCCCAAGGCTATGGTCTAAGTTTTATAA
TTTCCTTTGGTCCTCATAACAGACTTCTGTGTCAGGACTGTTTATGTCTC
ACTTTATAATTGATAAAACTGAATCTCATATAAAGCGATCTGTCATAATC
TATCTTTAGCATTAGCAGAGGTAGAATCCACATCTGATTATTAGAGTCTT
ACTATAATCTCTGAACTGTCTTGA
TTGTGGGTTCTATGTGGGTTGGGACGGGGAAACATGATAATACCAAAAAG
GGGAGGGCTAAAACAAAACAACGGTGGGGAAAGAAGCGGAGAAAAGGGGG
GGGGCGTAAAGTGAAATGAGATTGGGTGGGCGCGCTGTTCGTGGCATATG
TTAAATATGTGGTTGGGCCCTACTTTTTTACACCTTTAATAATCTATACA
CCAAGAATCCATGTTAGATGAGGAAGGCTGGTGCCGGGTTGATTAANCAA
TATAAATATGTGTTTGTGATAATAGGCGTTCGGTGGTAGCCTATAAGTGA
ATGCCGGGGCCCCTGGAGTCCATGGACGGCTGTCTTGTGAGGGGGGGAAG
AGATTTATATCCCTTTTGCGGGCCAAAATGGGACACAGAGGGGGGGGGGG
GTTTGAGGGGGTCCCCCCGGGGGGGAGGGGGGGGACCCGGGNCACCTTTG
GGGTAACAGAGCTGAGGNNCGATNTTTAGGGTTTGAAAAACCTTAATAAG
TTATTGTACACCAAGAAGGGGAGAAGTTCCTTCCCTGGGGCAAACAAGGG
GGAATTAACAAAAAAAAAAACGTGCGGGTACCAATTTGCCTTTTTCCTCC
CCCGGGCCCTGGGGGGGAAAAGGGGGCAGGGTGAGGAAAAATAAGGGGGG
GAATCGAGTTTTCGGGGGGCCGGGGAGAACCACCCCCAAAAAAGGGGGGT
TTACAAGAGGTGGGGGGGAAAAAATTTCCCTGGCGGGGGGGTCTAAAAAA
AAAGGGGGGTGAGGGGGGGATAAATATAACACGTGAGGGGGGGGCCGCCT
AAAAAAAAAAAATCCCCGGGGGGGGGGGGGGGGGGGAATTTTTTTAATTT
ACGGGGGGGGGGGCCCCCCCGGGGGGGGGAGGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_k04.b1 MSMg01no317_k04.b1 CHROMAT_FILE:
MSMg01no317_k04.b1 PHD_FILE: MSMg01no317_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:40 2005
         (272 letters)



>mm_chr9_50882276_50882947
          Length = 672

 Score =  503 bits (260), Expect = e-147
 Identities = 269/272 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttaaagtgattttaaatgctgatgcctgtattgtgtaggggatctgtgtttttgttcc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 agttaaagtgattttaaatgctgatgtctgtattgtgtaggggatctgtgtttttgttcc 260

                                                                       
Query: 61  agtgcagattgatgaagatgtttctatattttaaaataagtaggaaaatattacggcttc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgcagattgatgaagatatttctatattttaaaataagtaggaaaatattacggcttc 320

                                                                       
Query: 121 acttgatgtgtacaaagatgatgttcatgctcttagggagtcttgtgaaattatgggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttgatgtgtacaaagatgatgttcatgctcttagggagtcttgtgaaattatgggact 380

                                                                       
Query: 181 tagaataagagttgctgtgaagtgcttccttcagtgtagagggacactctgacgtctgtt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tagaataagagttgctgtgaagtgcttccttcagtgtagagggacactctgacgtcagtt 440

                                           
Query: 241 gtggattcctctaccctgaaatcccctgtcta 272
           ||||||||||||||||||||||||||||||||
Sbjct: 441 gtggattcctctaccctgaaatcccctgtcta 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)