BAC Information

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BAC

Clone NameMSMg01-317M08
Chromosome9 (Build37)
Map Location 41,591,717 - 41,758,790
singlet/doubletdoublet
Overlap gene6720432D03Rik
Upstream gene9030425E11Rik, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566
Downstream geneSorl1, Sc5d, Tecta, Tbcel, Grik4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317M08.T7 (MSMg01no317_m08.b1)MSMg01-317M08.TJ (MSMg01no317_m08.g1)
ACCAG437748AG437749
length717723
length of high quality
(start - end)
344 (69 - 412)525 (78 - 602)
definitionCHROMAT_FILE: MSMg01no317_m08.b1 PHD_FILE: MSMg01no317_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:49 2005CHROMAT_FILE: MSMg01no317_m08.g1 PHD_FILE: MSMg01no317_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,758,449 - 41,758,790)(41,591,717 - 41,592,241)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGAGGATCCGCGGAA
TTCTTGCGTTTCTAATATTTGGTTTAACCCAATCGGCCCGATTGCGTCAG
CGTACGCTCACACTCAGCCGTCTGAAGTCTAACCAGACATCAGAGGCTTG
TTTCAGGAGTGTCAACATTCCTCATCCTTTGAAAGAATTAAAACAAAAAA
ACGCAAACGCTGATTTATCCCCAAAGGAAAGGGGGGCTGAACAGACGTGC
AGCTAGGGTGACCAGAGGGAGTGAACGTGGAGATTCAGGCGGGAGTCAAC
AGTTGAACCTTGACGAATCCTGCTTGGGGAGAATTGGAGTTCTTTGTCGA
TCTAGGACGGACCTCTGGGTTTTATGAAGGTTGGGGCGAATAAGCTGAAC
TGGTTTGTGACACCCCACTCCTGGAGTCATGTAGACTGCTATTGCCAGGC
ACAGAACACGCTGAGCCTCTGTTTAACCCTTGGTCTGGCTGCTCCTTCCA
GGGCCAGACACAGCCTCCTAACAGCTGTGGGGGATTTCTGAATCTCCCTT
AAGGATGCAAGCTGTGTTTCCTGAGGATAGCAGCCCACACCCCAGAGGAT
CTCTTGAAAAGATGAGGCCTCCAGCAGACCTTGCTGAGTGCACCCGCTGG
AATGATCATATGTCTTGTAAACAGCCCTTTGCGTGTCACACACCAGGCAG
GGATGCTTGAGGAACCT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCACACAAAGAGCTCTTGTG
TAAAAGAAAGGTTTGATGCATCTGTTTAACTGCAGGTTGCAAAAATAGCT
GGGTAATTCAGAGCTGATCCTAACAGAACCTGGATATATACACATCCAAG
ATGTCCAATGATGGGTGATTTTTTGTCTGGTGGGAGGTGCTTCCTTTCTT
TGTAAAGTCCCAGGTAGGAAAGAGAATGTTTTTGAGAGATCCTGACACTG
GAACTGAATTATCCAGTGATCTCTTCTGACCTCAACAACTGAGATATGGT
GAAAAAAAAAGTTACCTATTAAAATACATTTTATTTTTGATTTGTGTGGT
TTTGCATATGTGTAAGCACCACCACGGCTCTTCAAAATCGCCTTATTTAA
AAGTATTTATACCTTTGAAATAGTCCCTTAAAATAAATGTATCTTGAGCT
TTAATCTAAAAACATTTGCTTGCTGGCTTCCCTATGACGCAGAGGAGAAA
GATGGTTTGTGAAATCCAACTGCATTTCCTAATATAAGCCTGACCTTCAG
AAATGAGGTTAAACTCATTGGATCTTGTTATCTTTATTTCAGACGTAAAG
AAATGTCACACAGACAAAGGAGCATCGTGAAGATAAAATGACTCATTGCT
GTCATGCTGTCTGCTACATATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_m08.b1 MSMg01no317_m08.b1 CHROMAT_FILE:
MSMg01no317_m08.b1 PHD_FILE: MSMg01no317_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:49 2005
         (344 letters)



>mm_chr9_41758249_41758992
          Length = 744

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtttaacccaatcggcccgattgcgtcagcgtacgctcacactcagccgtctgaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttggtttaacccaatcggcccgattgcgtcagcgtacgctcacactcagccgtctgaagt 483

                                                                       
Query: 61  ctaaccagacatcagaggcttgtttcaggagtgtcaacattcctcatcctttgaaagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctaaccagacatcagaggcttgtttcaggagtgtcaacattcctcatcctttgaaagaat 423

                                                                       
Query: 121 taaaacaaaaaaacgcaaacgctgatttatccccaaaggaaaggggggctgaacagacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 taaaacaaaaaaacgcaaacgctgatttatccccaaaggaaaggggggctgaacagacgt 363

                                                                       
Query: 181 gcagctagggtgaccagagggagtgaacgtggagattcaggcgggagtcaacagttgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcagctagggtgaccagagggagtgaacgtggagattcaggcgggagtcaacagttgaac 303

                                                                       
Query: 241 cttgacgaatcctgcttggggagaattggagttctttgtcgatctaggacggacctctgg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cttgacgaagcctgcttggggagaattggagttctttgtcgatctaggacggacctctgg 243

                                                     
Query: 301 gttttatgaaggttggggcgaataagctgaactggtttgtga 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gttttatgaaggttggggcgaataagctgaactggtttgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no317_m08.g1 MSMg01no317_m08.g1 CHROMAT_FILE:
MSMg01no317_m08.g1 PHD_FILE: MSMg01no317_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:49 2005
         (525 letters)



>mm_chr9_41591517_41592441
          Length = 925

 Score =  961 bits (497), Expect = 0.0
 Identities = 518/525 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcacacaaagagctcttgtgtaaaagaaaggtttgatgcatctgtttaactgcaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcacacaaagagctcttgtgtaaaagaaaggtttgatgcatctgtttaactgcaggt 260

                                                                       
Query: 61  tgcaaaaatagctgggtaattcagagctgatcctaacagaacctggatatatacacatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaaaaatagctgggtaattcagagctgatcctaacagaacctggatatatacacatcc 320

                                                                       
Query: 121 aagatgtccaatgatgggtgattttttgtctggtgggaggtgcttcctttctttgtaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatgtccaatgatgggtgattttttgtctggtgggaggtgcttcctttctttgtaaag 380

                                                                       
Query: 181 tcccaggtaggaaagagaatgtttttgagagatcctgacactggaactgaattatccagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccaggtaggaaagagaatgtttttgagagatcctgacactggaactgaattatccagt 440

                                                                       
Query: 241 gatctcttctgacctcaacaactgagatatggtgaaaaaaaaagttacctattaaaatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctcttctgacctcaacaactgagatatggtgaaaaaaaaagttacctattaaaatac 500

                                                                       
Query: 301 attttatttttgatttgtgtggttttgcatatgtgtaagcaccaccacggctcttcaaaa 360
           |||||||||||||||||||||||||||||||||||||||||  |  | ||||||||||||
Sbjct: 501 attttatttttgatttgtgtggttttgcatatgtgtaagcatgagtatggctcttcaaaa 560

                                                                       
Query: 361 tcgccttatttaaaagtatttatacctttgaaatagtcccttaaaataaatgtatcttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcgccttatttaaaagtatttatacctttgaaatagtcccttaaaataaatgtatcttga 620

                                                                       
Query: 421 gctttaatctaaaaacatttgcttgctggcttccctatgacgcagaggagaaagatggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctttaatctaaaaacatttgcttgctggcttccctatgacgcagaggagaaagatggtt 680

                                                        
Query: 481 tgtgaaatccaactgcatttcctaatataagcctgaccttcagaa 525
           ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 681 tgtgaaatccaactgcatttcataatagaagcctgaccttcagaa 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)