BAC Information

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BAC

Clone NameMSMg01-318F17
Chromosome9 (Build37)
Map Location 65,681,380 - 65,681,569
singlet/doubletsinglet
Overlap geneTrip4
Upstream geneAI115600, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180
Downstream gene2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318F17.T7 (MSMg01no318_f17.b1)MSMg01-318F17.TJ (MSMg01no318_f17.g1)
ACCAG438181AG438182
length768760
length of high quality
(start - end)
---190 (441 - 630)
definitionCHROMAT_FILE: MSMg01no318_f17.b1 PHD_FILE: MSMg01no318_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:31 2005CHROMAT_FILE: MSMg01no318_f17.g1 PHD_FILE: MSMg01no318_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATGCTTATCCCTGATCCCGGTATTATTTCTATTATAATTAGTT
TTCTGTCACTCCCCTTCATGAATCCCGTATATAAATTAGTTTATGACTCA
CCTATGCCATTTTAGAAATTGGATATATGCTTTCCCAATCTGTTGGTGCT
ACTTTTTGACTTATTGATAGTGGTTCTTTGCCTTGCGAAAACTTTGCTGC
CTCGTGATATCGCATTCGTCAATTCTATATTTTACTGCGAATGCGTCGTA
GCCCGATTCATGAACTTCTACCCGGTGCCAATATGTTCTAGCCTTGACCC
AACTTTCTCCTCTATCTTATTCTATTTCCCCAGCCACCTGTGGAGTTGCG
TGAATCTGTTAAATTTGAACCCCCCCCCACCCCANAAAAAAGTTTCCAGT
TGAGTGCTTCTACCTGATGACAACCAGAGTACTCTCTACAGTTGATAAAC
AGGCCGTCTGTCTCCCATTGCATGGCTTTACTTTCCTTGTGGAAGATCTA
GAGACCATATGTGTGTGGGCCCATTTCTGGGTCTTCAACTCTATTCCATT
GTTCTACTTGTCTGTCACTATACCGGTACCATGCAGCTTTGTCACAACTG
ATCTGTACTAATGTTTTATGCCATGTATCCCTCCCCTGTCATGCTACTGA
TCACCATTTCATCCCCACCAGGATGCTTCTTCTTCTCAATATCTTTCTGT
CCCTTTTTCTTTCCTTTT
AACCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCTTTAAGAATATACAATA
AGTGGGACCAATAACATTATGCAACATAATATGTATGCATGTAGGCACAT
GCATATCCCTGTCTATAGGTGCATACCCACACGCCCACCGGATAGCACTT
TAGCACACAAGACTCCACTATGATGTATAGATCCATTTATTCCTGTATCA
TAATGATTTATTCTGCTTCATTAACCCCTTCTTTGCTCCTTGATGGATCT
TGGAATCCAGTTTCCCTGTAAGAGAAAAAAGAAGTCTCACTCATTATTTA
TTTTTATATTTGCATTGCAAATCTTTCCTGGCCTCCTAGGTCTTCTGGTT
ACTGTGTTCCTGTCACATTCAATCCCCCCCCCCCCACCANGCTGGATGCT
TCCAAACTTCAGAGTTTTATTTTCTAAGAAAGCAGTGGGAATACTGTAGA
CAGACAGACACACACACACACAAATATTTATCTAAAGAATTTAAGAAGCT
AATATTTCTAACTTTGTAGGTTATGATGTCTGATACTAAGATAAAATTTT
CTACAGATCACAGATCTGTAGATAAACAGAAAAGAAGAAAGGATAGGGGC
ATGCCATACAGAAATGCACTTCACACAGTAGGAGACCCATTCCACTGACC
TGTTAACTAGCTGAATACAAAGCATGAACCTCCCTCACAGTGGTGAAAGC
AGTTCAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_f17.g1 MSMg01no318_f17.g1 CHROMAT_FILE:
MSMg01no318_f17.g1 PHD_FILE: MSMg01no318_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:31 2005
         (190 letters)



>mm_chr9_65681180_65681769
          Length = 590

 Score =  360 bits (186), Expect = e-104
 Identities = 189/190 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctggatgcttccaaacttcagagttttattttctaagaaagcagtgggaatactgtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctggatgcttccaaacttcagagttttattttctaagaaagcagtgggaatactgtaga 260

                                                                       
Query: 61  cagacagacacacacacacacaaatatttatctaaagaatttaagaagctaatatttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagacagacacacacacacacaaatatttatctaaagaatttaagaagctaatatttcta 320

                                                                       
Query: 121 actttgtaggttatgatgtctgatactaagataaaattttctacagatcacagatctgta 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 actttgtaggttatgatgtctgatactaagataaaattttctaaagatcacagatctgta 380

                     
Query: 181 gataaacaga 190
           ||||||||||
Sbjct: 381 gataaacaga 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)