BAC Information

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BAC

Clone NameMSMg01-320C19
Chromosome9 (Build37)
Map Location 54,876,898 - 54,877,190
singlet/doubletsinglet
Overlap geneChrnb4
Upstream geneTnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3
Downstream geneEG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320C19.T7 (MSMg01no320_c19.b1)MSMg01-320C19.TJ (MSMg01no320_c19.g1)
ACCAG439481AG439482
length736727
length of high quality
(start - end)
297 (75 - 371)355 (73 - 427)
definitionCHROMAT_FILE: MSMg01no320_c19.b1 PHD_FILE: MSMg01no320_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:38 2005CHROMAT_FILE: MSMg01no320_c19.g1 PHD_FILE: MSMg01no320_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGA
ATTCACATTCACACTCCACAACCTGGGACAGAGCTCTGCACACAGACGGT
GCAAAATAAATGTTTGTTGAATGAACGGCTCCTGCTCTCCTTCAAACACA
CACACACACACACACACACACACACACACACACACACACACACACTCTGA
GTAGCTGTCCTTGCTCCCTACCTGCTTTCTGCCTTTACACCGTGGTTGGT
TCAAGCCTGTCTCTTTCTCACACTGATCTGTTTCTCTCATGGTGCCTGCC
ACATTGTTGGCACTCAAGATACTTCTGGAATTAAGGAGTGTTAGTGGCTT
TTTTAAAAAAATAAATGTTGAGCCAGGGTTCACACCTTTAGTCCCAGCAC
TTGGGAGGCAGAGGCAGGCGGATCTCTGAGTTCAAGGCCAGCCTGGTCTA
CAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAT
AAAAACAAGCAAACAAACAAACAAACAAACAAAACAATACAAAAAAATGT
TGCTGTTTTCCTTTTACCCAGCTAGCTCCCAAATAATTTTGACTGGACTA
TTGTATATATTTAAGAAGCTATGGGGGCACAACAACGAGCAGCATTATCT
ATTTTAATCCTCTAAACTGATCTGGCTACCTCCCAGACAAGGGCCCAAAG
ATACTTGCATTTTAGTACTGATCTGGGTCTCAAAAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGAAAT
CCTGTCTCGAAAAAAAATTGCCACATACTATTTTAGTGCATTAGAAAGGC
TGACTCTGGAGCTGGACTTTGGCCTTCACTTTCCTGACCCAAGCATGCTT
GCTTAAAAGTTTTGTTGTGCCCTGAGTCCATGGGAAACCCAGACGAGCCC
AAGAATTGCAAAGTTCGCTGCAACTCACAAAAGAGTCTTTTATTGTTTCA
AGTTCGAACTTGGATTGCCTGCCTTGCACTAACTGCGTGAATGCTGGCAA
GCGACCCTGAGTCCTTAAAACACTGGATTTATCTACAGTACAGTTAGGAA
TCCTGTGAATGTTCACAGAAAAGGGGAGTAGAGGGCTGTAATCATTTGGT
GGAATGGTACTGAAGGAGGGCGTGTTAATGGGTGTCTGTTCAAGGACAAT
TTTATAGCCAGTCGTAACTGTCTGTGACCTGAATTCTGATCTCTCTTGAT
CTTGATATTTCACTAAGTTCTTAAAGACAGACACCTAGAGAGCTATCAGG
AGGAGTGTTGGTTTTTGGAGACACAAAGGTGGCTCGGATGTCTTGAAGTG
TCTCTTAAGAAGGAAGGTCCTCATTAAGGGGGAGTTTTATGAATAGTGCC
ATTCTAGTGCTAAGGAGAAAAGGGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_c19.b1 MSMg01no320_c19.b1 CHROMAT_FILE:
MSMg01no320_c19.b1 PHD_FILE: MSMg01no320_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:38 2005
         (297 letters)



>mm_chr9_54876577_54877273
          Length = 697

 Score =  489 bits (253), Expect = e-143
 Identities = 285/297 (95%), Gaps = 4/297 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggacagagctctgcacacagacggtgcaaaataaatgtttgttgaatgaacggctcctg 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 614 gggacagagctctgcacacagaaggtgcaaaataaatgtttgttgaatgaatggctcctg 555

                                                                       
Query: 61  ctctccttcaaacacacacacacacacacacacacacacacacacacacacacacacaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   | 
Sbjct: 554 ctctccttcaaacacacacacacacacacacacacacacacacacacacacacac---c- 499

                                                                       
Query: 121 ctctgagtagctgtccttgctccctacctgctttctgcctttacaccgtggttggttcaa 180
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| 
Sbjct: 498 ctctgagtagctgtccttgctcccttcctgctttctgcctttacaccatggttggttcag 439

                                                                       
Query: 181 gcctgtctctttctcacactgatctgtttctctcatggtgcctgccacattgttggcact 240
           ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 438 gcctgtctctttctcacactgatctgtttctctcacggtgcctgccccactgttggcact 379

                                                                    
Query: 241 caagatacttctggaattaaggagtgttagtggcttttttaaaaaaataaatgttga 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caagatacttctggaattaaggagtgttagtggcttttttaaaaaaataaatgttga 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)