BAC Information

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BAC

Clone NameMSMg01-320D01
Chromosome9 (Build37)
Map Location 45,221,707 - 45,388,620
singlet/doubletdoublet
Overlap geneDscaml1
Upstream geneCcdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2
Downstream geneCep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320D01.T7 (MSMg01no320_d01.b1)MSMg01-320D01.TJ (MSMg01no320_d01.g1)
ACCAG439493AG439494
length657812
length of high quality
(start - end)
227 (74 - 300)223 (188 - 410)
definitionCHROMAT_FILE: MSMg01no320_d01.b1 PHD_FILE: MSMg01no320_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:39 2005CHROMAT_FILE: MSMg01no320_d01.g1 PHD_FILE: MSMg01no320_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,221,707 - 45,221,931)(45,388,398 - 45,388,620)
sequence
TCTGTTACCCCCCCCCCGCCAACCTCCCAGAAAGTCCTGTCAATCAATAA
CCAAGTCTGCTTTCACCAAAAACTTCTGGACCTCAGCGTTCCTGCTCTGC
AGTAAACAACAGCTCAGGTCTCTTGTCTGCAAACCAAACATTCACTATCA
AGTTAATAAAGTTATTCAGGAGAGGCCTGAACCCTCAGACAGCCACTCAG
GAGACATGAGCAGAAACAGGGGGTGCAGAATGGACCTCGGCTGTTCTGGG
GTCCTTCCTGCTATTCGGACATACTTTCTTAGATCAGAATATACTCTCTT
TTCCATACCTCCCNGGATCAGGTGCCCCAGGATGGGAATCATACCTCTAA
GTTCATGCACGCCCACAAAAAAAACAACCCAGATCCGGGGGAGGATGTAC
TCAGTAAACAATAGTTGAGCGACCACACTGGCTGCTTTAGAGGAAGGCAT
AAGGGTAAGGAGGGCTGTTGCAGGCCTGTAGTCTGGGTCAGAGTCGGTGG
TGTGAAGGCTCACTGACGTGTGGTGTCTTTGAGGTCTTTCCCAGTATTAG
CCTTTCGCTCATCTCTTGAGTCTTGGTGTGATTGAATTGACTTTGCGTCA
TTGTGAACCAAGTTATAGTTAATGCCAACTAAGTGACCTTAGCTAGGAAA
AGGATCC
ACCCGCTACCGTCCCGCTNAAATAATACAGTAGGCAACCCNTCCTAANTC
CTCCGCTATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTGCTAATCCCCCTTTG
TCAGCTCTGATGCCGACATTTCTATCCTAAAAACGGCCCAGCGATTTGAG
AGGGATTACAGACCCTCAATCCTTCAGCATGTGCGAGAAGAATGTTTTCT
CAAATCAAATTTTTCACAAATCTGTTTTCAAAAATAATCAAGGTGCAAAT
CCCCCTCAGAATGGCAGGATTGGGGGGAGACACCGGCTCTCCCTCACGCA
ACATAGCAACAGAATACTATCTCTGAGGAGGGAGGGTGGGGGGAGACACA
GAGCTACCTGTTTCAATAGTTCTCCNAGCCCTCCCGCGCTTGCTGGGGTG
GGGGGGACTCTGTTTTGAGAGGCTGAAAAAGAAAAAAAACAGTGGGACGG
GGGTCTTGCTTATATTGACTGGATAGCATGACTCTGAGGGGTCCCTATAT
TATGGGATGCAGTAAGGGAGAAAAAAAAAAAGGCGAGATTCCGGGTTAGA
GGAAAGGGGGTTCCATTCAGATTAATCATGGCGAACCCACACCCGAGGTT
GGGTCAATGGAGGCGGGAAACAAAGGAAAAAGGCGCGGGTCCTTAATTAA
ACCCCCGGGTGCCTGTAGGACACATTACGAACTCACACTCTGAAGCGAGG
GAGGTGCGTGTAATAACATAACAGGTTCCCGCGCGTAACACAGCCGGCGA
TTGAGATTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_d01.b1 MSMg01no320_d01.b1 CHROMAT_FILE:
MSMg01no320_d01.b1 PHD_FILE: MSMg01no320_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:39 2005
         (227 letters)



>mm_chr9_45221507_45222133
          Length = 627

 Score =  397 bits (205), Expect = e-115
 Identities = 220/225 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctggacctcagcgttcctgctctgcagtaaacaacagctcaggtctcttgtctgcaaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctggacctcagcattcctgctctgcagtaaacaacagctcaggtctcttgtctgcaaa 260

                                                                       
Query: 61  ccaaacattcactatcaagttaataaagttattcaggagaggcctgaaccctcagacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaacattcactatcaagttaataaagttattcaggagaggcctgaaccctcagacagc 320

                                                                       
Query: 121 cactcaggagacatgagcagaaacagggggtgcagaatggacctcggctgttctggggtc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactcaggagacatgagcaggaacagggggtgcagaatggacctcggctgttctggggtc 380

                                                        
Query: 181 cttcctgctattcggacatactttcttagatcagaatatactctc 225
           ||||||||||  | |||||||||||||||||||||||||||||||
Sbjct: 381 cttcctgctaccctgacatactttcttagatcagaatatactctc 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no320_d01.g1 MSMg01no320_d01.g1 CHROMAT_FILE:
MSMg01no320_d01.g1 PHD_FILE: MSMg01no320_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:39 2005
         (223 letters)



>mm_chr9_45388198_45388820
          Length = 623

 Score =  424 bits (219), Expect = e-123
 Identities = 222/223 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagcgatttgagagggattacagaccctcaatccttcagcatgtgcgagaagaatgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccagcgatttgagagggattacagaccctcaatccttcagcatgtgcgagaagaatgttt 364

                                                                       
Query: 61  tctcaaatcaaatttttcacaaatctgttttcaaaaataatcaaggtgcaaatccccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tctcaaatcaaatttttcacaaatctgttttcaaaaataatcaaggtgcaaatccccctc 304

                                                                       
Query: 121 agaatggcaggattggggggagacaccggctctccctcacgcaacatagcaacagaatac 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 303 agaatggcaggattggggggagacaccggctctcccgcacgcaacatagcaacagaatac 244

                                                      
Query: 181 tatctctgaggagggagggtggggggagacacagagctacctg 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tatctctgaggagggagggtggggggagacacagagctacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)