BAC Information

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BAC

Clone NameMSMg01-320H18
Chromosome9 (Build37)
Map Location 17,298,309 - 17,298,792
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320H18.T7 (MSMg01no320_h18.b1)MSMg01-320H18.TJ (MSMg01no320_h18.g1)
ACCAG439704AG439705
length744752
length of high quality
(start - end)
223 (378 - 600)485 (129 - 613)
definitionCHROMAT_FILE: MSMg01no320_h18.b1 PHD_FILE: MSMg01no320_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:00 2005CHROMAT_FILE: MSMg01no320_h18.g1 PHD_FILE: MSMg01no320_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXGTCAGCTCAAGGACTTTCTAGGACATTGGAACACTGG
CGAAGGCTTAGTTGTGTCCCAATTCAATCTTAAAAGGCACTTATAATAAG
AATACTAAAAGAGATCACGTGGATCCATACACCAGACTAACTCGGGAATA
GGGTATGAGTATGAGAACACAAAAACTCCAGGAGGTGTGCTTCCTTGAAA
CTCTCTGCCTCGTGAGTGGCTTTTAGGCTGCACAGCCTGTCAAGCTGACT
CGACCAGAGTGCATGGTAGATCATATTCTAACAGGGCCTGGGGTAGGAAA
GCTTGCTTGGTATAATTGCTCACTCTGTGTATGTTTGCTGTGGATCTCAA
CATGTACTTCTCATGGGGAAATATTCTACGTATTTAATCTGTCAGTGTCA
GAATCTTAGTTGTGACAGCATTTGAATGTGTCTCCATTGGAAGAAATTGG
GCAAAATGCATGTTGACAGTGTCTATATTATTTTTACAAGCACCTGTCAA
TCTCCTCAAGCTTTATTGCAATCTACAATTGCTTTTTCTTAAAATTTCAA
GTGAAAAACAAGAGAGAGAGAGAGAGAGAGCTTACCAAAGTTTAGAAGCG
CAGGACATATTTTATAAAGAGTTTTGCTCCCAGTAAATTTATTTTACGAA
TACTGAAAATTGGGGAAAATATTGATACAAAACAAGAAAAGCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATAACCACTCATCTTCTTTTCA
GGAACTCTGAAATACACTTGGACACATTACATATCTGTCTGATAGTTAGG
TACTCCTACCAGAATCAGGCCATTTTCCTTGGTGTGGTTCTTTCTATCAC
TCCCTTGTCCCTAAGATCTAACAAAGGCTGCAAATTCCACCAGGTCTTTG
AATTAAGTCCCGAGGATTTCAAATACTGCCTTAACTGTAGCTGTGAGCAA
AATGCCAAGAGGTGTGGGGGGACTATAGAGGTACCTTGAGAGGGCTCAGA
ACTGGCATGTCTGTTTTTCCCCTGTACCTCTAGCCTGAACAAAAGAATAA
AATGCATCCAACATGTCTGAGGAGAGGGAAGGTGCCAACTGCCTCTGACC
AGTTGTCCCTCCATAGCCAGCACTAGCCTTCTACAGATGTCACACTGCAA
GGCCAGACTGAACTCTTGAGGGGTACCCCATATAGACATCAGAAATGAGT
GATATTTTCCTCCACTTAGCAGGACTAAAGGAAAAACAATTTCCACAATT
TCCCTGGGGAAAAAGCAAACAAGAACAACAGGAAATGACAAGAAATTGAC
ACTTCAATCATATTTGAAGATGATATTGAAACTTCTCAGGGGCACGAGTT
GAGAAATATCCTGATTTAGTAATAATATTAAGAAGGTAGTTAATACAGCC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_h18.g1 MSMg01no320_h18.g1 CHROMAT_FILE:
MSMg01no320_h18.g1 PHD_FILE: MSMg01no320_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:00 2005
         (485 letters)



>mm_chr9_17298109_17298992
          Length = 884

 Score =  845 bits (437), Expect = 0.0
 Identities = 473/489 (96%), Gaps = 9/489 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatatctgtctgatagttaggtactcctaccagaatcaggccattttccttggtgtggt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatatctgtctgatagttaggtgctcctaccagaatcaggccattttccttggtgtggt 260

                                                                       
Query: 61  tctttctatcactcccttgtccctaagatctaacaaaggctgcaaattccaccaggtctt 120
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 261 tctttctatcactcccttgtccctaagatccaacaaaggctgcaaatt-caccaggtctt 319

                                                                       
Query: 121 tgaattaagtcccgaggatttcaaatactgccttaactgtagctgtgagcaaaatgccaa 180
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 320 tgaattaagtcccgaggatttcaaatactgccttaattttagctgtgagcaaaatgccaa 379

                                                                       
Query: 181 gaggtgtggggggactatagaggtaccttgagagggctcagaactggcatgtctg----t 236
           |||| |||||||||||||||||||||||||||||||||||||||||||||| |||     
Sbjct: 380 gaggcgtggggggactatagaggtaccttgagagggctcagaactggcatgcctgcagc- 438

                                                                       
Query: 237 ttttcccctgtacctctagcctgaacaaaagaataaaatgcatccaacatgtctgaggag 296
              ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ---tcccctgtagctctagcctgaacaaaagaataaaatgcatccaacatgtctgaggag 495

                                                                       
Query: 297 agggaaggtgccaactgcctctgaccagttgtccctccatagccagcactagccttctac 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agggaaggtgccaactgcctctgaccagttgtccctccatagccagcactagccttctac 555

                                                                       
Query: 357 agatgtcacactgcaaggccagactgaactcttgaggggtaccccatatagacatcagaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agatgtcacactgcaaggccagactgaactcttgaggggtaccccatatagacatcagaa 615

                                                                       
Query: 417 atgagtgatattttcctccacttagcaggactaaaggaaaaacaatttccacaatttccc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atgagtgatattttcctccacttagcaggactaaaggaaaaacaatttccacaatttccc 675

                    
Query: 477 tggggaaaa 485
           |||||||||
Sbjct: 676 tggggaaaa 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space:   415150
Effective search space used:   415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)