BAC Information

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BAC

Clone NameMSMg01-320J24
Chromosome9 (Build37)
Map Location 80,817,912 - 80,818,218
singlet/doubletsinglet
Overlap genenone
Upstream geneFilip1, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392, 4930486G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320J24.T7 (MSMg01no320_j24.b1)MSMg01-320J24.TJ (MSMg01no320_j24.g1)
ACCAG439809AG439810
length731739
length of high quality
(start - end)
314 (45 - 358)229 (125 - 353)
definitionCHROMAT_FILE: MSMg01no320_j24.b1 PHD_FILE: MSMg01no320_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:10 2005CHROMAT_FILE: MSMg01no320_j24.g1 PHD_FILE: MSMg01no320_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTGAGCTCTGAGAGAAGGGGTGTGAGTTTTCAACATTGGATATTT
TACATTTTTATAAGTCTAAGGCATACTTGTGAGTCTCAAGGTGATCTCTT
AGTTGTAAAATATTTCCTTGCTGTTGCCTGATTCCTCTGAATTGGAATAG
AAATGTATCTCCTACACCACTGTGAGTGGGAAATATGTGACCAGGTATAT
TTATTTCTAGGTTCTATAATGTTTTATTGCCCTGAATCTGTTTGGTACAA
CTCCCATTCTGCTGAGATTTGTATAACACATTATAAAGTTTGAGGTCAAA
CACTATTTTTCCTGCNTTGCTNACCCANACCCAAAAGTTTAAACTTCTTG
GGACTTCTGTGTGTGAACACATATAAAAAAATATTTTGAACGGTTGTGTT
TTCTGGTTTGTCCTTCTAACAGATTACATTGTCTTTCTTTCCAAGTTTTC
CATGCTTTTATGCATTAAACAATAATAAGTGATTTTTGTGTTGACCTCAA
TGGAGTCTACACTTAAACTGATCTAAAATTGGTGTACAGAAAACAATCAT
GTACCTCCATTCTCATCTCACACTCCATGCTTGTACTATAAAGACCCATC
TACATATAATCTATCCTGCTTCACATGGCACCACAGCTGTGTCTTCATCT
CTAAGTACCATACAAAACCACCAGCTACTCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCCCCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAAATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGATTATTGGACATAGTACTACCGGAGGATCCAG
CAATATCTCNCCTGGGCTTCACANNACAAGATCCCCNAANTGGTAAGAAG
GACACATGCTCCACTATGTTCATAAAAGCATTNAAAATAATAGCCGGAGA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTTCTAGCCAAATGGATGGACCTGGAGGGCATCATCGTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCATAACCTAGGATACACAAGATATAAGATACTATTTCCTA
AACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_j24.b1 MSMg01no320_j24.b1 CHROMAT_FILE:
MSMg01no320_j24.b1 PHD_FILE: MSMg01no320_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:10 2005
         (314 letters)



>mm_chr9_80817708_80818420
          Length = 713

 Score =  572 bits (296), Expect = e-168
 Identities = 305/308 (99%), Gaps = 1/308 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctgagctctgagagaaggggtgtgagttttcaacattggatattttacatttt 64
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 511 gaattccctgagctctgagagaaggggtgtgaattttcaacattggatattttacatttt 452

                                                                       
Query: 65  tataagtctaaggcatacttgtgagtctcaaggtgatctcttagttgtaaaatatttcct 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tataagtctaagg-atacttgtgagtctcaaggtgatctcttagttgtaaaatatttcct 393

                                                                       
Query: 125 tgctgttgcctgattcctctgaattggaatagaaatgtatctcctacaccactgtgagtg 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgctgttgcctgattcctttgaattggaatagaaatgtatctcctacaccactgtgagtg 333

                                                                       
Query: 185 ggaaatatgtgaccaggtatatttatttctaggttctataatgttttattgccctgaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggaaatatgtgaccaggtatatttatttctaggttctataatgttttattgccctgaatc 273

                                                                       
Query: 245 tgtttggtacaactcccattctgctgagatttgtataacacattataaagtttgaggtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgtttggtacaactcccattctgctgagatttgtataacacattataaagtttgaggtca 213

                   
Query: 305 aacactat 312
           ||||||||
Sbjct: 212 aacactat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)