BAC Information

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BAC

Clone NameMSMg01-321G13
Chromosome9 (Build37)
Map Location 85,416,835 - 85,576,349
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666672, BC023892
Downstream geneIbtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321G13.T7 (MSMg01no321_g13.b1)MSMg01-321G13.TJ (MSMg01no321_g13.g1)
ACCAG440386AG440387
length743742
length of high quality
(start - end)		315 (41 - 355)669 (74 - 742)
definitionCHROMAT_FILE: MSMg01no321_g13.b1 PHD_FILE: MSMg01no321_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:08 2005CHROMAT_FILE: MSMg01no321_g13.g1 PHD_FILE: MSMg01no321_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,576,039 - 85,576,349)(85,416,835 - 85,417,503)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCATGAATTCTACTGTAGTGCCCTTCAATTCAGAGGCATTTTAAAGCAGC
CATGTCTGTGTAGCGCACCGCTTGTACCTTAAAGTGACCTGCTGATTGTG
AGGAATACTGATTTTATCTGAAAAGCTCCATGGTTAAGTTAATCTGCAGA
TTATGATGCTGAACAAAGATCTCTGTTTTCAGGTTTGTTTGGAACCTGTA
AAATGCCAGTGCAATTTCTCCCTTTTATTTGCATATTTTGGGGGGAATCC
CTCTGGGAGATTATTCAGGACCACCCTAACATTAGGGTTACATAGGAAGC
CTATGTTTTTATTCCAACTACCACTATGTAGGCTTAGATTTTTAAAAAAC
CTATTTTAAATACCGGTTTTCAAATGCTTCACCCCTCCTCCCTCTCTCCC
ACTGCCCAAAGGAAGGGGGAGGGGGGAAAGATGGTAAATAGGGTAAGAGG
ATGTAGACCTGTTTAGAGTATTTCTTTGGAGGTAATTCCAATCTCCATTG
CCTAAATATCATCAGTCCGGTATAGCAGTGTCAGGATACCTTACACCAAT
CAGCAGCACTGGTACGATCTAGCCCACACATTCATGCTTCCTCCGAATCG
CATGATTGATTCATTTATAGCCCTTATGCATCCAACTGAATATTTTCCAC
TACTCTACACTTTTTGTATTCTTTTTTCCATCTTGCTCTTCTT

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGAACTAGAACAAAAATATTTTAAATT
TGTAGATAATTTTGGTCTTGCTTATTGTATCTTGTGCCTGGAAATTTCCC
ACTTGTTCCTTTACCCATTAACCTTTAAGTGACATTCTGTTTGCTTTTAT
TTTACAATTCAGTATACAAATTGCTATACTCTTCTAAATTTTTCCCATAT
TCTTAAAGATACTTCTATATGGAGCTGCCTATGTTTATCTATAACATTGA
CTGTGAAACTTTACTTGTATTTATTCAATACATATGGCTTCTTAAATTAT
AAATGTGCCTGTGTTTCTGAATAAGCAAGTGAAACTAAATGAGAGTTGAG
GTTAAAATTTCAAACCATACTTGTCTCAATACCAAGAGGAAAATTACTGC
ATAAAATTAATACTAACCAGTGTCACTGGGGAACGTGTAGTCATGTCAAT
TGCTATGGAGAAGACTTTGTATATATCACCTCATGTAAATGTCAAACTGA
CCCTCTAAGACAGTTAAAAATGCATTCTCTGTTTTATTTTAAATCCCATT
TTTACTCAACCACTTTAGCTGTGCAGCATGGATTAAGCTGGGCTTTCTTC
ATTTCTATTTTTTCTTCTCAAAATAAATATTAAAATAATATCTGAAATGA
GGATTAAATGAAATTACATATATTACACCTCACACTATAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_g13.b1 MSMg01no321_g13.b1 CHROMAT_FILE:
MSMg01no321_g13.b1 PHD_FILE: MSMg01no321_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:08 2005
         (315 letters)



>mm_chr9_85575835_85576549
          Length = 715

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatgaattctactgtagtgcccttcaattcagaggcattttaaagcagccatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctcatgaattctactgtagtgcccttcaattcagaggcattttaaagcagccatg 456

                                                                       
Query: 65  tctgtgtagcgcaccgcttgtaccttaaagtgacctgctgattgtgaggaatactgattt 124
           ||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 455 tctgtgtagcgtagggcttgtaccttaaagtgacctgctgattgtgaagaatactgattt 396

                                                                       
Query: 125 tatctgaaaagctccatggttaagttaatctgcagattatgatgctgaacaaagatctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tatctgaaaagctccatggttaagttaatctgcagattatgatgctgaacaaagatctct 336

                                                                       
Query: 185 gttttcaggtttgtttggaacctgtaaaatgccagtgcaatttctcccttttatttgcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gttttcaggtttgtttggaacctgtaaaatgccagtgcaatttctcccttttatttgcat 276

                                                                       
Query: 245 attttggggggaatccctctgggagattattcaggaccaccctaacattagggttacata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 attttggggggaatccctctgggagattattcaggaccaccctaacattagggttacata 216

                      
Query: 305 ggaagcctatg 315
           |||||||||||
Sbjct: 215 ggaagcctatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no321_g13.g1 MSMg01no321_g13.g1 CHROMAT_FILE:
MSMg01no321_g13.g1 PHD_FILE: MSMg01no321_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:08 2005
         (669 letters)



>mm_chr9_85416635_85417703
          Length = 1069

 Score = 1278 bits (661), Expect = 0.0
 Identities = 667/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaactagaacaaaaatattttaaatttgtagataattttggtcttgcttattgtatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaactagaacaaaaatattttaaatttgtagataattttggtcttgcttattgtatctt 260

                                                                       
Query: 61  gtgcctggaaatttcccacttgttcctttacccattaacctttaagtgacattctgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcctggaaatttcccacttgttcctttacccattaacctttaagtgacattctgtttg 320

                                                                       
Query: 121 cttttattttacaattcagtatacaaattgctatactcttctaaatttttcccatattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttattttacaattcagtatacaaattgctatactcttctaaatttttcccatattct 380

                                                                       
Query: 181 taaagatacttctatatggagctgcctatgtttatctataacattgactgtgaaacttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaagatacttctatatggagctgcctatgtttatctataacattgactgtgaaacttta 440

                                                                       
Query: 241 cttgtatttattcaatacatatggcttcttaaattataaatgtgcctgtgtttctgaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgtatttattcaatacatatggcttcttaaattataaatgtgcctgtgtttctgaata 500

                                                                       
Query: 301 agcaagtgaaactaaatgagagttgaggttaaaatttcaaaccatacttgtctcaatacc 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 agcaagtgaaactaaatgagagttgaggttaaaatttcaaatcatacttgtctcaatacc 560

                                                                       
Query: 361 aagaggaaaattactgcataaaattaatactaaccagtgtcactggggaacgtgtagtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaggaaaattactgcataaaattaatactaaccagtgtcactggggaacgtgtagtca 620

                                                                       
Query: 421 tgtcaattgctatggagaagactttgtatatatcacctcatgtaaatgtcaaactgaccc 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 tgtcaattgctatggagaagactttgtatataacacctcatgtaaatgtcaaactgaccc 680

                                                                       
Query: 481 tctaagacagttaaaaatgcattctctgttttattttaaatcccatttttactcaaccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctaagacagttaaaaatgcattctctgttttattttaaatcccatttttactcaaccac 740

                                                                       
Query: 541 tttagctgtgcagcatggattaagctgggctttcttcatttctattttttcttctcaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttagctgtgcagcatggattaagctgggctttcttcatttctattttttcttctcaaaa 800

                                                                       
Query: 601 taaatattaaaataatatctgaaatgaggattaaatgaaattacatatattacacctcac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaatattaaaataatatctgaaatgaggattaaatgaaattacatatattacacctcac 860

                    
Query: 661 actataata 669
           |||||||||
Sbjct: 861 actataata 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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